# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_5.hmm.txt # target sequence database: proteomes/Anolis_carolinensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_5 [M=309] Accession: PF01795.18 Description: MraW methylase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.9e-65 220.4 0.0 2e-64 218.1 0.0 1.8 1 tr|H9GAM7|H9GAM7_ANOCA Methyltransferase like 15 OS=Anolis c ------ inclusion threshold ------ 0.14 11.7 0.0 0.26 10.8 0.0 1.5 1 tr|R4G9E3|R4G9E3_ANOCA Arsenite methyltransferase OS=Anolis Domain annotation for each sequence (and alignments): >> tr|H9GAM7|H9GAM7_ANOCA Methyltransferase like 15 OS=Anolis carolinensis OX=28377 GN=METTL15 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 218.1 0.0 2.2e-68 2e-64 72 306 .. 4 268 .. 1 271 [] 0.86 Alignments for each domain: == domain 1 score: 218.1 bits; conditional E-value: 2.2e-68 EEEES-GGGHHHHHHHTTTT..-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS-...-HHHHHHH--HHHHHHHHHHH CS Methyltransf_5 72 tlvkgnfkelkealaeanvt..kvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsael...tAaevlnrlseeeLakilkey 153 + + g+f++l++ l++a+v+ ++dg+llD G Ss+qld++erGFs ++d+pLDmRmd ++ tAa+v+n l++++La+il+ y tr|H9GAM7|H9GAM7_ANOCA 4 QPLLGQFSQLEALLTSAGVQpgNLDGVLLDAGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPdmpTAADVVNALDQQALASILRMY 90 556789***********976669***********************************98743337********************* PP H--TTHHHHHHHHHHHHHHS---BHHHHHHHHHHHS-------.........-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEE CS Methyltransf_5 154 geekfakriakaivekrkkkpiettkelaevikkvvpakekrk.......kihpatrvFQAlRIavNdEleeleelleaalellakg 233 gee++ak+ia aiv++r+ pi++t++la++++ ++p + + +h at++FQAlRI+vN+El+el l++a + l++g tr|H9GAM7|H9GAM7_ANOCA 91 GEERHAKKIALAIVQARSVYPITRTQQLASIVAGAFPDVALYArkdllhrPTHVATKTFQALRIFVNNELHELYAGLQTAEKFLKPG 177 *************************************988766667887789*********************************** PP EEEEEEESSHHHHHHHHHHHHHTT---....---------------..............-EEEEE.E.E---HHHHHH-GGGTT-E CS Methyltransf_5 234 grlavisFhSledrivkkvfkeaskke....evPaglpvaseelka..............klklitkkpilpseeeikeNprsrsak 302 gr++ +sFhSledri+k+++ +e +v ++++ + +++++ k +i kk+++p ++++++Npr rsak tr|H9GAM7|H9GAM7_ANOCA 178 GRFVALSFHSLEDRIIKRFLLGIDISEkfnlSVRQKIKQMGRDFSEleeedefsngnvnlKWIAIQKKVLTPQAKDLQDNPRGRSAK 264 *******************97544433000134444444333333355566777788866777899********************* PP EEEE CS Methyltransf_5 303 Lrvi 306 Lr + tr|H9GAM7|H9GAM7_ANOCA 265 LRGA 268 **76 PP >> tr|R4G9E3|R4G9E3_ANOCA Arsenite methyltransferase OS=Anolis carolinensis OX=28377 GN=AS3MT PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 2.8e-05 0.26 22 104 .. 69 152 .. 45 173 .. 0.84 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 2.8e-05 -EEEES--TTSHHHHHHHTT-.-TT.EEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTTTT-EEEEEEE-S--H CS Methyltransf_5 22 gvyiDaTlGaggHsealLeql.sel.rligidrDksalarakerLkefekrltlvkgnfkelkealaeanvtkvdgillDLGvSs 104 +D G+g ++L+ql e+ +++gid+ + +++ak+ + + +++ + k n ++++ ++++ ++g ++ L +S tr|R4G9E3|R4G9E3_ANOCA 69 CWILDLGCGSGRDC-YMLSQLvGENgHITGIDMTEAQVEVAKKHIDYHMNKFGYKKPNVNFIHCYMEKLSEAGLKGECYNLVISN 152 55677777776655.56666515558**************************************999999888999999988886 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (309 nodes) Target sequences: 18528 (9796552 residues searched) Passed MSV filter: 679 (0.0366472); expected 370.6 (0.02) Passed bias filter: 319 (0.0172172); expected 370.6 (0.02) Passed Vit filter: 28 (0.00151123); expected 18.5 (0.001) Passed Fwd filter: 2 (0.000107945); expected 0.2 (1e-05) Initial search space (Z): 18528 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.07 # Mc/sec: 43244.78 // [ok]