# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_5.hmm.txt # target sequence database: proteomes/Ciona_intestinalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_5 [M=309] Accession: PF01795.18 Description: MraW methylase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-85 286.6 0.1 2.9e-85 286.4 0.1 1.0 1 tr|F6QVW6|F6QVW6_CIOIN Uncharacterized protein OS=Ciona inte ------ inclusion threshold ------ 0.037 13.4 0.4 0.05 13.0 0.4 1.2 1 tr|F7BAT7|F7BAT7_CIOIN Uncharacterized protein OS=Ciona inte 0.11 11.9 0.0 0.68 9.3 0.0 1.9 2 tr|H2XY27|H2XY27_CIOIN 2-methoxy-6-polyprenyl-1,4-benzoquino Domain annotation for each sequence (and alignments): >> tr|F6QVW6|F6QVW6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 286.4 0.1 5.3e-89 2.9e-85 4 308 .. 1 315 [. 1 316 [. 0.92 Alignments for each domain: == domain 1 score: 286.4 bits; conditional E-value: 5.3e-89 X--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTT. CS Methyltransf_5 4 HvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaean. 89 H+pV+++e+v++l++k + v iD+T+GaggH++ ++e++++ ++i++drD++a ++a++ k+f+ r+ + g+f+el++ l+e++ tr|F6QVW6|F6QVW6_CIOIN 1 HIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRDEKAFEIAQDLSKKFKGRIIPLLGKFSELDKLLSENGi 87 9*************************************************************************************6 PP .TT-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS-...-HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHH CS Methyltransf_5 90 .vtkvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsael...tAaevlnrlseeeLakilkeygeekfakriakaivekrkk 172 +++++ llD G Ss+q+d++erGFs +d+pLDmRmd +++ tAa+v+n+l+eeeL++i+++yg+e+ a++i+ i e+r tr|F6QVW6|F6QVW6_CIOIN 88 vENSLNAALLDAGCSSMQFDQPERGFSLVRDGPLDMRMDGNRSEgqiTAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENR-- 172 44689*********************************976643336*************************************9.. PP S---BHHHHHHHHHHHS-------.........-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHH CS Methyltransf_5 173 kpiettkelaevikkvvpakekrk.......kihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkv 252 pi+tt ela v++ ++++++ + h at++F A+RI+vNdEl+e+ + ++++ + l +gg++ vi+FhSledr+vk++ tr|F6QVW6|F6QVW6_CIOIN 173 -PISTTLELARVVSMAFSQTSDVFrvdslgrRCHIATKTFMAIRIFVNDELNEICHGIKTSEKYLMNGGKMGVITFHSLEDRVVKRM 258 .**************99987765457888889******************************************************* PP HHHTT-----------...--------EEEEE.E.E---HHHHHH-GGGTT-EEEEEEE CS Methyltransf_5 253 fkeaskkeevPaglpv...aseelkaklklitkkpilpseeeikeNprsrsakLrviek 308 +k+ + + P ++++ + +++++++ + + +lps eei++NprsrsakLr++ + tr|F6QVW6|F6QVW6_CIOIN 259 LKQIEIS--KPFNVKMgvgKRSKTERRYWKREQSLLLPSGEEIEQNPRSRSAKLRIATR 315 **99984..565555511223444556777777889*******************9975 PP >> tr|F7BAT7|F7BAT7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.0 0.4 9e-06 0.05 47 184 .. 108 249 .. 100 263 .. 0.64 Alignments for each domain: == domain 1 score: 13.0 bits; conditional E-value: 9e-06 EEEEES-HHHH.HHHTT.....---EEEEES-G.GGHHHHHHHTT.TT-EE..EEEEE-S--HHHHH-GGG---SSS--BS---S-T CS Methyltransf_5 47 ligidrDksal.arakerLkefekrltlvkgnf.kelkealaean.vtkvd..gillDLGvSslqldkaerGFsfaedapLDmRmdq 128 ig d D+++l +++e+Lk+ + r+ + +el + +++ ++++d gi+lD vS +l G f ++a + q tr|F7BAT7|F7BAT7_CIOIN 108 TIGEDYDERILpSITNEVLKAVVARFDASELITqRELVSRQVSEDlADRADsfGIILD-DVSLTHL---TFGHEF-TSAVEQKQVAQ 189 6777888887733566777777777544333332333322222222333332256666.4888888...456666.34444567888 PP TSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHH....HHHHS---BHHHHHHH CS Methyltransf_5 129 saeltAaevlnrlseeeLakilkeygeekfakriakaive....krkkkpiettkelaev 184 ++ A+ v+++ ++++La+i g+ k a iak ++e + +++e ++e+a + tr|F7BAT7|F7BAT7_CIOIN 190 QEAERARFVVEKAEQQKLAAITTAEGDAKAAEMIAKSVEEagegLIQLRKLEAAEEIAGL 249 8999**********************************9933332233445555555544 PP >> tr|H2XY27|H2XY27_CIOIN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Ciona intestinalis OX=7719 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.3 0.0 0.066 3.7e+02 11 64 .. 78 137 .. 74 152 .. 0.74 2 ? 9.3 0.0 0.00012 0.68 216 264 .. 173 220 .. 159 251 .. 0.82 Alignments for each domain: == domain 1 score: 0.3 bits; conditional E-value: 0.066 HHHHHT---TT-EEEES--TTSHHHHHHHTT--......TTEEEEEES-HHHHHHHTT.. CS Methyltransf_5 11 evvellepkedgvyiDaTlGaggHsealLeqls......elrligidrDksalarakerL 64 +++++l+p +++ ++D+ G+g s +++++++ e +++ +d+ +++l++ k+r tr|H2XY27|H2XY27_CIOIN 78 RLITVLNPCDKTKLLDCAGGTGDISFRFIKRVKlqhdcpEPNVTVCDINPNMLEVGKRRA 137 67899999999999***9999999998887654111111446788888888888877765 PP == domain 2 score: 9.3 bits; conditional E-value: 0.00012 HHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT------- CS Methyltransf_5 216 leeleelleaalellakggrlavisFhSledrivkkvfkeaskkeevPa 264 +++++l++a ++l++ggr+ + F +e+ +++ + +s + +P tr|H2XY27|H2XY27_CIOIN 173 CTHIDKVLKEAYRVLEPGGRFLCLEFSEVENPYLRNLYNTYSF-QVIPV 220 567999*************************999999999887.45565 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (309 nodes) Target sequences: 16678 (5370518 residues searched) Passed MSV filter: 580 (0.0347764); expected 333.6 (0.02) Passed bias filter: 291 (0.0174481); expected 333.6 (0.02) Passed Vit filter: 35 (0.00209857); expected 16.7 (0.001) Passed Fwd filter: 3 (0.000179878); expected 0.2 (1e-05) Initial search space (Z): 16678 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.04 # Mc/sec: 41487.25 // [ok]