# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltransf_5.hmm.txt
# target sequence database: proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltransf_5 [M=309]
Accession: PF01795.18
Description: MraW methylase family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-85 286.6 0.1 2.9e-85 286.4 0.1 1.0 1 tr|F6QVW6|F6QVW6_CIOIN Uncharacterized protein OS=Ciona inte
------ inclusion threshold ------
0.037 13.4 0.4 0.05 13.0 0.4 1.2 1 tr|F7BAT7|F7BAT7_CIOIN Uncharacterized protein OS=Ciona inte
0.11 11.9 0.0 0.68 9.3 0.0 1.9 2 tr|H2XY27|H2XY27_CIOIN 2-methoxy-6-polyprenyl-1,4-benzoquino
Domain annotation for each sequence (and alignments):
>> tr|F6QVW6|F6QVW6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 286.4 0.1 5.3e-89 2.9e-85 4 308 .. 1 315 [. 1 316 [. 0.92
Alignments for each domain:
== domain 1 score: 286.4 bits; conditional E-value: 5.3e-89
X--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTT. CS
Methyltransf_5 4 HvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaean. 89
H+pV+++e+v++l++k + v iD+T+GaggH++ ++e++++ ++i++drD++a ++a++ k+f+ r+ + g+f+el++ l+e++
tr|F6QVW6|F6QVW6_CIOIN 1 HIPVMAEELVSGLNIKRGDVIIDMTFGAGGHTKFIMENYKHCKVIALDRDEKAFEIAQDLSKKFKGRIIPLLGKFSELDKLLSENGi 87
9*************************************************************************************6 PP
.TT-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS-...-HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHH CS
Methyltransf_5 90 .vtkvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsael...tAaevlnrlseeeLakilkeygeekfakriakaivekrkk 172
+++++ llD G Ss+q+d++erGFs +d+pLDmRmd +++ tAa+v+n+l+eeeL++i+++yg+e+ a++i+ i e+r
tr|F6QVW6|F6QVW6_CIOIN 88 vENSLNAALLDAGCSSMQFDQPERGFSLVRDGPLDMRMDGNRSEgqiTAADVVNNLDEEELTEIIYKYGDERNARNISSSIIENR-- 172
44689*********************************976643336*************************************9.. PP
S---BHHHHHHHHHHHS-------.........-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHH CS
Methyltransf_5 173 kpiettkelaevikkvvpakekrk.......kihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkv 252
pi+tt ela v++ ++++++ + h at++F A+RI+vNdEl+e+ + ++++ + l +gg++ vi+FhSledr+vk++
tr|F6QVW6|F6QVW6_CIOIN 173 -PISTTLELARVVSMAFSQTSDVFrvdslgrRCHIATKTFMAIRIFVNDELNEICHGIKTSEKYLMNGGKMGVITFHSLEDRVVKRM 258
.**************99987765457888889******************************************************* PP
HHHTT-----------...--------EEEEE.E.E---HHHHHH-GGGTT-EEEEEEE CS
Methyltransf_5 253 fkeaskkeevPaglpv...aseelkaklklitkkpilpseeeikeNprsrsakLrviek 308
+k+ + + P ++++ + +++++++ + + +lps eei++NprsrsakLr++ +
tr|F6QVW6|F6QVW6_CIOIN 259 LKQIEIS--KPFNVKMgvgKRSKTERRYWKREQSLLLPSGEEIEQNPRSRSAKLRIATR 315
**99984..565555511223444556777777889*******************9975 PP
>> tr|F7BAT7|F7BAT7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.0 0.4 9e-06 0.05 47 184 .. 108 249 .. 100 263 .. 0.64
Alignments for each domain:
== domain 1 score: 13.0 bits; conditional E-value: 9e-06
EEEEES-HHHH.HHHTT.....---EEEEES-G.GGHHHHHHHTT.TT-EE..EEEEE-S--HHHHH-GGG---SSS--BS---S-T CS
Methyltransf_5 47 ligidrDksal.arakerLkefekrltlvkgnf.kelkealaean.vtkvd..gillDLGvSslqldkaerGFsfaedapLDmRmdq 128
ig d D+++l +++e+Lk+ + r+ + +el + +++ ++++d gi+lD vS +l G f ++a + q
tr|F7BAT7|F7BAT7_CIOIN 108 TIGEDYDERILpSITNEVLKAVVARFDASELITqRELVSRQVSEDlADRADsfGIILD-DVSLTHL---TFGHEF-TSAVEQKQVAQ 189
6777888887733566777777777544333332333322222222333332256666.4888888...456666.34444567888 PP
TSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHH....HHHHS---BHHHHHHH CS
Methyltransf_5 129 saeltAaevlnrlseeeLakilkeygeekfakriakaive....krkkkpiettkelaev 184
++ A+ v+++ ++++La+i g+ k a iak ++e + +++e ++e+a +
tr|F7BAT7|F7BAT7_CIOIN 190 QEAERARFVVEKAEQQKLAAITTAEGDAKAAEMIAKSVEEagegLIQLRKLEAAEEIAGL 249
8999**********************************9933332233445555555544 PP
>> tr|H2XY27|H2XY27_CIOIN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Ciona intestinalis OX=7719
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.3 0.0 0.066 3.7e+02 11 64 .. 78 137 .. 74 152 .. 0.74
2 ? 9.3 0.0 0.00012 0.68 216 264 .. 173 220 .. 159 251 .. 0.82
Alignments for each domain:
== domain 1 score: 0.3 bits; conditional E-value: 0.066
HHHHHT---TT-EEEES--TTSHHHHHHHTT--......TTEEEEEES-HHHHHHHTT.. CS
Methyltransf_5 11 evvellepkedgvyiDaTlGaggHsealLeqls......elrligidrDksalarakerL 64
+++++l+p +++ ++D+ G+g s +++++++ e +++ +d+ +++l++ k+r
tr|H2XY27|H2XY27_CIOIN 78 RLITVLNPCDKTKLLDCAGGTGDISFRFIKRVKlqhdcpEPNVTVCDINPNMLEVGKRRA 137
67899999999999***9999999998887654111111446788888888888877765 PP
== domain 2 score: 9.3 bits; conditional E-value: 0.00012
HHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT------- CS
Methyltransf_5 216 leeleelleaalellakggrlavisFhSledrivkkvfkeaskkeevPa 264
+++++l++a ++l++ggr+ + F +e+ +++ + +s + +P
tr|H2XY27|H2XY27_CIOIN 173 CTHIDKVLKEAYRVLEPGGRFLCLEFSEVENPYLRNLYNTYSF-QVIPV 220
567999*************************999999999887.45565 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (309 nodes)
Target sequences: 16678 (5370518 residues searched)
Passed MSV filter: 580 (0.0347764); expected 333.6 (0.02)
Passed bias filter: 291 (0.0174481); expected 333.6 (0.02)
Passed Vit filter: 35 (0.00209857); expected 16.7 (0.001)
Passed Fwd filter: 3 (0.000179878); expected 0.2 (1e-05)
Initial search space (Z): 16678 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.04
# Mc/sec: 41487.25
//
[ok]