# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_5.hmm.txt # target sequence database: proteomes/Monodelphis_domestica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_5 [M=309] Accession: PF01795.18 Description: MraW methylase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.3e-91 306.8 0.0 3.6e-91 306.1 0.0 1.3 1 tr|F7FNK2|F7FNK2_MONDO Methyltransferase like 15 OS=Monodelp ------ inclusion threshold ------ 0.077 12.7 0.0 0.12 12.1 0.0 1.2 1 tr|F7B9I4|F7B9I4_MONDO HemK methyltransferase family member Domain annotation for each sequence (and alignments): >> tr|F7FNK2|F7FNK2_MONDO Methyltransferase like 15 OS=Monodelphis domestica OX=13616 GN=METTL15 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 306.1 0.0 3.4e-95 3.6e-91 3 307 .. 71 404 .. 69 406 .] 0.90 Alignments for each domain: == domain 1 score: 306.1 bits; conditional E-value: 3.4e-95 XX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTT CS Methyltransf_5 3 eHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaean 89 H+pV+++ev++ l+p++++ +D+T+G+ggHs+a+L++ + +l+ +drD++a a+a++ + + k+++ + ++f++ +++l +a+ tr|F7FNK2|F7FNK2_MONDO 71 LHIPVMVNEVINCLAPRQGQNILDMTFGSGGHSRAILQKELDVTLYVLDRDPTAYAIAQQLSELYPKQIRALLSQFSQAEAMLMKAG 157 6***********************************************************87888899******************9 PP TT..-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTS...S--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHH CS Methyltransf_5 90 vt..kvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsa...eltAaevlnrlseeeLakilkeygeekfakriakaivekrk 171 v+ +vdg+llDLG Ss+qld++erGFsf++d+pLDmRmd + tAa+v+n l++++La il++ygeek+ak+ia aiv++r+ tr|F7FNK2|F7FNK2_MONDO 158 VQpgTVDGVLLDLGCSSMQLDTPERGFSFRKDGPLDMRMDGGRypdMHTAADVVNALDQQALALILRTYGEEKYAKKIASAIVQARS 244 76669***********************************86522156*************************************** PP HS---BHHHHHHHHHHHS-------.........-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHH CS Methyltransf_5 172 kkpiettkelaevikkvvpakekrk.......kihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkk 251 pi++t++la++++ ++p+ + ++ ++h at++FQAlRI+vN+El+el l++a + l++ggrl+ +sFhSledrivk+ tr|F7FNK2|F7FNK2_MONDO 245 IYPITRTQQLASIVAGAFPTAALYErkdllqrSTHIATKTFQALRIFVNNELNELYVGLKTAQKFLRPGGRLVALSFHSLEDRIVKR 331 *******************99887777899999****************************************************** PP HHHHTT-----.---.----------...............-EEEEE.E.E---HHHHHH-GGGTT-EEEEEE CS Methyltransf_5 252 vfkeaskkeev.Pag.lpvaseelka...............klklitkkpilpseeeikeNprsrsakLrvie 307 +++ +e++ P++ ++++ + + ++i kk+++p +e+++Npr rsakLr++ tr|F7FNK2|F7FNK2_MONDO 332 FLHGIDVTEKLsPKKrQKIIQAQSLClnqeneeffrsssplEWEMIYKKVVTPESQEVQDNPRGRSAKLRAAI 404 **98776666656531223222211122223457888888899***************************975 PP >> tr|F7B9I4|F7B9I4_MONDO HemK methyltransferase family member 1 OS=Monodelphis domestica OX=13616 GN=HEMK1 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 1.1e-05 0.12 24 76 .. 174 228 .. 159 248 .. 0.86 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 1.1e-05 EEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....-..--EEEEES CS Methyltransf_5 24 yiDaTlGaggHsealLeqlselrligidrDksalarakerLkefe..krltlvkg 76 +D+ G+g + lL++l++ r++++d+ ++a++ ++e+ ++ + +r+++v++ tr|F7B9I4|F7B9I4_MONDO 174 ILDVCCGSGAIALSLLSKLTQSRVVAVDKGEEAVQLTRENAQRLHleDRIQIVRH 228 5899*********************************998887543377888765 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (309 nodes) Target sequences: 21272 (11266248 residues searched) Passed MSV filter: 704 (0.0330951); expected 425.4 (0.02) Passed bias filter: 361 (0.0169707); expected 425.4 (0.02) Passed Vit filter: 26 (0.00122226); expected 21.3 (0.001) Passed Fwd filter: 2 (9.40203e-05); expected 0.2 (1e-05) Initial search space (Z): 21272 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.24u 0.01s 00:00:00.25 Elapsed: 00:00:00.09 # Mc/sec: 38680.78 // [ok]