# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_5.hmm.txt # target sequence database: proteomes/Mus_musculus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_5 [M=309] Accession: PF01795.18 Description: MraW methylase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-89 298.4 0.0 1.6e-88 297.5 0.0 1.4 1 sp|Q9DCL4|MET15_MOUSE Probable methyltransferase-like protei Domain annotation for each sequence (and alignments): >> sp|Q9DCL4|MET15_MOUSE Probable methyltransferase-like protein 15 OS=Mus musculus OX=10090 GN=Mettl15 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 297.5 0.0 7e-93 1.6e-88 3 307 .. 71 404 .. 69 406 .] 0.90 Alignments for each domain: == domain 1 score: 297.5 bits; conditional E-value: 7e-93 XX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTTT CS Methyltransf_5 3 eHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaeanv 90 H+pV++++vv+ l+p++++v++D+T+G+ggH++a+L++ ++ ++++drD+ a a+a++ + + +++ + g+f++ ++ l +a+v sp|Q9DCL4|MET15_MOUSE 71 LHIPVMVDQVVHCLAPQKGQVFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAEALLMKAGV 158 6***********************************************************77788899******************97 PP T..-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS-...-HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS CS Methyltransf_5 91 t..kvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsael...tAaevlnrlseeeLakilkeygeekfakriakaivekrkkk 173 + ++dgil+DLG Ss+qld +erGFs ++d+pLDmRmd ++ tA++v+n l++++La+il+ ygeek+ak+ia ai ++r++ sp|Q9DCL4|MET15_MOUSE 159 QpgTIDGILMDLGCSSMQLDAPERGFSLRKDGPLDMRMDGDRYPdtpTASDVVNALDQQALASILRAYGEEKHAKKIASAIIQARSTY 246 6669***********************************98743335***************************************** PP ---BHHHHHHHHHHHS-------.........-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH CS Methyltransf_5 174 piettkelaevikkvvpakekrk.......kihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfk 254 pi++t++la++++ ++p+++ + ++h at++FQAlRI+vN+El+el l++a + l++ggrl+ +sFhSledrivk+++ sp|Q9DCL4|MET15_MOUSE 247 PISRTQQLASIVAGAFPPSAVYArkdllqrSTHIATKTFQALRIFVNNELNELYAGLRTAEKFLKTGGRLVALSFHSLEDRIVKRFLL 334 *****************99887667899989*******************************************************98 PP HTT------------------.................-EEEEE.E.E---HHHHHH-GGGTT-EEEEEE CS Methyltransf_5 255 easkkeevPaglpvaseelka.................klklitkkpilpseeeikeNprsrsakLrvie 307 s +e+ ++ + +++++ k +li kk+++p ++++++Npr rsakLr++ sp|Q9DCL4|MET15_MOUSE 335 GISMTERFNLSIRQKVKQTSQldsdqeteerhsvraplKWELIHKKVLTPEDQDVQDNPRGRSAKLRAAI 404 7766554433333333222222333445567888899999***************************975 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (309 nodes) Target sequences: 22289 (11757923 residues searched) Passed MSV filter: 687 (0.0308224); expected 445.8 (0.02) Passed bias filter: 365 (0.0163758); expected 445.8 (0.02) Passed Vit filter: 32 (0.00143569); expected 22.3 (0.001) Passed Fwd filter: 1 (4.48652e-05); expected 0.2 (1e-05) Initial search space (Z): 22289 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.10 # Mc/sec: 36331.98 // [ok]