# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltransf_5.hmm.txt
# target sequence database: proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltransf_5 [M=309]
Accession: PF01795.18
Description: MraW methylase family
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-111 370.9 0.0 2.1e-111 370.7 0.0 1.0 1 sp|Q9HVZ5|RSMH_PSEAE Ribosomal RNA small subunit methyltra
2.5e-05 22.3 0.0 3.6e-05 21.8 0.0 1.2 1 tr|Q9I2I3|Q9I2I3_PSEAE Uncharacterized protein OS=Pseudomona
Domain annotation for each sequence (and alignments):
>> sp|Q9HVZ5|RSMH_PSEAE Ribosomal RNA small subunit methyltransferase H OS=Pseudomonas aeruginosa (strain ATCC 15692 /
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 370.7 0.0 7.5e-115 2.1e-111 2 308 .. 5 311 .. 4 312 .. 0.97
Alignments for each domain:
== domain 1 score: 370.7 bits; conditional E-value: 7.5e-115
XXX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TT.EEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTT CS
Methyltransf_5 2 leHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlsel.rligidrDksalarakerLkefekrltlvkgnfkelkealaean 89
++H++VLl+e+v++l+p+edg+y+D+T+G+ggHs+alLe+l + rl+g+d+D++a+++ k+ L++ r+ +v+ +f+el ++++ ++
sp|Q9HVZ5|RSMH_PSEAE 5 YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGgRLLGFDKDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARG 92
68*****************************************99**************999.99999******************999 PP
.TT-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS---B CS
Methyltransf_5 90 .vtkvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsaeltAaevlnrlseeeLakilkeygeekfakriakaivekrkkkpiet 177
++vdg+llDLGvSs+qld++erGFsf +d+pLDmRm++ + +Aae + + eee+a+++keygee+fakr+a+aiv++r+++p+e+
sp|Q9HVZ5|RSMH_PSEAE 93 lEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFER 181
778************************************************************************************** PP
HHHHHHHHHHHS-------..-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT---..---- CS
Methyltransf_5 178 tkelaevikkvvpakekrkkihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfkeaskke..evPa 264
t++laevi+ + pa ek k +patr+FQ+lRI vN+El le+ l+aale la ggrl+visFhSledrivk ++++ +k e ++P+
sp|Q9HVZ5|RSMH_PSEAE 182 TADLAEVITVANPAWEKGK--NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHSLEDRIVKLFMRKHAKGEadNLPR 268
*************999966..*********************************************************999752257** PP
------------EEEEE.E.E---HHHHHH-GGGTT-EEEEEEE CS
Methyltransf_5 265 glpvaseelkaklklitkkpilpseeeikeNprsrsakLrviek 308
+lp++s+ ++++lkl++ kp +seee+k+Nprsrsa +rv+ek
sp|Q9HVZ5|RSMH_PSEAE 269 DLPIRSKVFEPRLKLLG-KPQYASEEELKANPRSRSAVMRVAEK 311
*****************.9************************8 PP
>> tr|Q9I2I3|Q9I2I3_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.8 0.0 1.3e-08 3.6e-05 20 75 .. 44 99 .. 29 115 .. 0.85
Alignments for each domain:
== domain 1 score: 21.8 bits; conditional E-value: 1.3e-08
TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEE CS
Methyltransf_5 20 edgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvk 75
+ iDa G g ++lLe++++ r++++d D l++a++ L+ f++r+++v+
tr|Q9I2I3|Q9I2I3_PSEAE 44 GRFTAIDAACGPGSLGRRLLERFPAARVVALDADVMLLEIARTALAGFAERVRVVE 99
344569**********************************************9986 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (309 nodes)
Target sequences: 5563 (1857172 residues searched)
Passed MSV filter: 138 (0.0248068); expected 111.3 (0.02)
Passed bias filter: 117 (0.0210318); expected 111.3 (0.02)
Passed Vit filter: 15 (0.00269639); expected 5.6 (0.001)
Passed Fwd filter: 2 (0.000359518); expected 0.1 (1e-05)
Initial search space (Z): 5563 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 28693.31
//
[ok]