# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Methyltransf_5.hmm.txt
# target sequence database:        proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Methyltransf_5  [M=309]
Accession:   PF01795.18
Description: MraW methylase family
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
   1.8e-111  370.9   0.0   2.1e-111  370.7   0.0    1.0  1  sp|Q9HVZ5|RSMH_PSEAE    Ribosomal RNA small subunit methyltra
    2.5e-05   22.3   0.0    3.6e-05   21.8   0.0    1.2  1  tr|Q9I2I3|Q9I2I3_PSEAE  Uncharacterized protein OS=Pseudomona


Domain annotation for each sequence (and alignments):
>> sp|Q9HVZ5|RSMH_PSEAE  Ribosomal RNA small subunit methyltransferase H OS=Pseudomonas aeruginosa (strain ATCC 15692 / 
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.7   0.0  7.5e-115  2.1e-111       2     308 ..       5     311 ..       4     312 .. 0.97

  Alignments for each domain:
  == domain 1  score: 370.7 bits;  conditional E-value: 7.5e-115
                           XXX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TT.EEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTT CS
        Methyltransf_5   2 leHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlsel.rligidrDksalarakerLkefekrltlvkgnfkelkealaean 89 
                           ++H++VLl+e+v++l+p+edg+y+D+T+G+ggHs+alLe+l +  rl+g+d+D++a+++ k+ L++   r+ +v+ +f+el ++++ ++
  sp|Q9HVZ5|RSMH_PSEAE   5 YRHITVLLEEAVSALAPREDGCYLDGTFGRGGHSRALLEKLGAGgRLLGFDKDPQAIQTGKA-LAAEDGRFVIVQRSFAELGDEVRARG 92 
                           68*****************************************99**************999.99999******************999 PP

                           .TT-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS---B CS
        Methyltransf_5  90 .vtkvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsaeltAaevlnrlseeeLakilkeygeekfakriakaivekrkkkpiet 177
                             ++vdg+llDLGvSs+qld++erGFsf +d+pLDmRm++ +  +Aae + +  eee+a+++keygee+fakr+a+aiv++r+++p+e+
  sp|Q9HVZ5|RSMH_PSEAE  93 lEGRVDGVLLDLGVSSPQLDDPERGFSFLNDGPLDMRMNPGQGISAAEFIANATEEEIARVFKEYGEERFAKRMARAIVQRRQERPFER 181
                           778************************************************************************************** PP

                           HHHHHHHHHHHS-------..-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT---..---- CS
        Methyltransf_5 178 tkelaevikkvvpakekrkkihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfkeaskke..evPa 264
                           t++laevi+ + pa ek k  +patr+FQ+lRI vN+El  le+ l+aale la ggrl+visFhSledrivk ++++ +k e  ++P+
  sp|Q9HVZ5|RSMH_PSEAE 182 TADLAEVITVANPAWEKGK--NPATRAFQGLRIHVNNELGDLERGLDAALESLAVGGRLVVISFHSLEDRIVKLFMRKHAKGEadNLPR 268
                           *************999966..*********************************************************999752257** PP

                           ------------EEEEE.E.E---HHHHHH-GGGTT-EEEEEEE CS
        Methyltransf_5 265 glpvaseelkaklklitkkpilpseeeikeNprsrsakLrviek 308
                           +lp++s+ ++++lkl++ kp  +seee+k+Nprsrsa +rv+ek
  sp|Q9HVZ5|RSMH_PSEAE 269 DLPIRSKVFEPRLKLLG-KPQYASEEELKANPRSRSAVMRVAEK 311
                           *****************.9************************8 PP

>> tr|Q9I2I3|Q9I2I3_PSEAE  Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.3e-08   3.6e-05      20      75 ..      44      99 ..      29     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.3e-08
                            TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEE CS
          Methyltransf_5 20 edgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvk 75
                               + iDa  G g   ++lLe++++ r++++d D   l++a++ L+ f++r+++v+
  tr|Q9I2I3|Q9I2I3_PSEAE 44 GRFTAIDAACGPGSLGRRLLERFPAARVVALDADVMLLEIARTALAGFAERVRVVE 99
                            344569**********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (309 nodes)
Target sequences:                         5563  (1857172 residues searched)
Passed MSV filter:                       138  (0.0248068); expected 111.3 (0.02)
Passed bias filter:                      117  (0.0210318); expected 111.3 (0.02)
Passed Vit filter:                        15  (0.00269639); expected 5.6 (0.001)
Passed Fwd filter:                         2  (0.000359518); expected 0.1 (1e-05)
Initial search space (Z):               5563  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 28693.31
//
[ok]