# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_5.hmm.txt # target sequence database: proteomes/Xenopus_tropicalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_5 [M=309] Accession: PF01795.18 Description: MraW methylase family Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 5.2e-87 292.7 0.0 2.2e-86 290.6 0.0 1.7 1 tr|F6PSG1|F6PSG1_XENTR Methyltransferase-like 15 OS=Xenopus ------ inclusion threshold ------ 0.18 11.7 0.0 0.39 10.6 0.0 1.5 1 tr|F6YTE0|F6YTE0_XENTR Trimethylguanosine synthase 1 OS=Xeno Domain annotation for each sequence (and alignments): >> tr|F6PSG1|F6PSG1_XENTR Methyltransferase-like 15 OS=Xenopus tropicalis OX=8364 GN=mettl15 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 290.6 0.0 1.8e-90 2.2e-86 2 308 .. 43 374 .. 42 375 .] 0.90 Alignments for each domain: == domain 1 score: 290.6 bits; conditional E-value: 1.8e-90 XXX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHT CS Methyltransf_5 2 leHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaea 88 + HvpV+++ev+e l+p+e+++ +D T+GaggH++ +L++ s+ +++++drD+ a a+a++ ++ ++++ + g+f+e k+ l++a tr|F6PSG1|F6PSG1_XENTR 43 VLHVPVMVNEVIECLAPQEGQTILDLTFGAGGHTTSILKRASNIKVLALDRDPAAFAIAQQLAHSCGHNIQPLLGRFSESKDLLTSA 129 57***********************************************************99999999****************** PP TTT..-EEEEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS-...-HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHH CS Methyltransf_5 89 nvt..kvdgillDLGvSslqldkaerGFsfaedapLDmRmdqsael...tAaevlnrlseeeLakilkeygeekfakriakaivekr 170 +v+ ++dg+llD G Ss+q+d+++rGFs +d+pLDmRmd ++ tAa+v+n l++++La+ilk+ygee++ak+ia aiv++r tr|F6PSG1|F6PSG1_XENTR 130 GVEpgSIDGVLLDAGCSSMQFDTPDRGFSLSRDGPLDMRMDGDRYPdmpTAADVVNALDQQALASILKTYGEERHAKKIASAIVQAR 216 976559***********************************98743337************************************** PP HHS---BHHHHHHHHHHHS-----...--..-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH CS Methyltransf_5 171 kkkpiettkelaevikkvvpakek...rkkihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfk 254 + pi++t++la++++ + + ++ ++ h at++FQAlRI+vN+El+el+ l++a + l++ggrl+visFhSledrivk++++ tr|F6PSG1|F6PSG1_XENTR 217 SIYPITRTQQLASIVTGASIQARTdllQRPAHVATKTFQALRIFVNNELNELHAGLSTAETFLRPGGRLVVISFHSLEDRIVKRFLH 303 ***************9987766652224589******************************************************98 PP ..HTT------------------...............-EEEEE.E.E---HHHHHH-GGGTT-EEEEEEE CS Methyltransf_5 255 ..easkkeevPaglpvaseelka...............klklitkkpilpseeeikeNprsrsakLrviek 308 +++ k+++ a+ ++++ + ++ +i kk+++p ++++ eNpr rsakLr++ k tr|F6PSG1|F6PSG1_XENTR 304 giDMADKPNLAARHKIRQGQRNSkemedeeflmshsnpAWTVIQKKVLTPQYQDVLENPRGRSAKLRAAIK 374 33455667777777777655443456667777777777889**************************9865 PP >> tr|F6YTE0|F6YTE0_XENTR Trimethylguanosine synthase 1 OS=Xenopus tropicalis OX=8364 GN=tgs1 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.6 0.0 3.2e-05 0.39 22 87 .. 689 754 .. 669 762 .. 0.85 Alignments for each domain: == domain 1 score: 10.6 bits; conditional E-value: 3.2e-05 -EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....-..--EEEEES-GGGHHHHHHH CS Methyltransf_5 22 gvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefe..krltlvkgnfkelkealae 87 gv +Da G gg + ++ ++ +r+i++d+D+ l+ a+++ + + +r+++++g f l++ l+ tr|F6YTE0|F6YTE0_XENTR 689 GVVVDAFCGVGGNAIQFAKA--GNRVIAVDIDPVKLDFARNNAEVYGvtDRIEFIRGDFMLLAQDLKA 754 7889********99888654..679***************99888765488********999998875 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (309 nodes) Target sequences: 24182 (11782085 residues searched) Passed MSV filter: 732 (0.0302704); expected 483.6 (0.02) Passed bias filter: 353 (0.0145976); expected 483.6 (0.02) Passed Vit filter: 32 (0.0013233); expected 24.2 (0.001) Passed Fwd filter: 2 (8.27061e-05); expected 0.2 (1e-05) Initial search space (Z): 24182 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.10 # Mc/sec: 36406.64 // [ok]