# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_8.hmm.txt # target sequence database: proteomes/Ciona_intestinalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_8 [M=219] Accession: PF05148.15 Description: Hypothetical methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-48 165.8 0.0 2.2e-48 164.9 0.0 1.4 1 tr|F6WNH2|F6WNH2_CIOIN Uncharacterized protein OS=Ciona inte 4.2e-07 29.9 0.1 4.9e-06 26.5 0.0 2.4 2 tr|H2XS49|H2XS49_CIOIN Uncharacterized protein OS=Ciona inte 7.5e-07 29.1 0.0 1.4e-06 28.2 0.0 1.5 1 tr|H2Y1L1|H2Y1L1_CIOIN Uncharacterized protein OS=Ciona inte 2.6e-06 27.4 0.0 4.4e-06 26.6 0.0 1.6 1 tr|H2XWY6|H2XWY6_CIOIN Uncharacterized protein OS=Ciona inte 7.1e-06 25.9 0.5 6.2e-05 22.8 0.1 2.1 2 tr|F6ZIX6|F6ZIX6_CIOIN Uncharacterized protein OS=Ciona inte 8.9e-06 25.6 0.0 1.7e-05 24.7 0.0 1.4 1 tr|H2XS53|H2XS53_CIOIN Uncharacterized protein OS=Ciona inte 9.2e-06 25.5 0.0 2e-05 24.5 0.0 1.7 1 tr|H2XVH5|H2XVH5_CIOIN Uncharacterized protein OS=Ciona inte 1.8e-05 24.6 0.0 3.8e-05 23.6 0.0 1.7 1 tr|H2XNZ2|H2XNZ2_CIOIN Uncharacterized protein OS=Ciona inte 2.8e-05 24.0 0.1 8.1e-05 22.5 0.1 1.8 2 tr|F6ZXR3|F6ZXR3_CIOIN Uncharacterized protein OS=Ciona inte 7.6e-05 22.6 0.0 0.0001 22.1 0.0 1.3 1 tr|F6UYV3|F6UYV3_CIOIN uncharacterized protein LOC100187144 8.2e-05 22.4 0.0 0.00024 20.9 0.0 1.8 1 tr|F6RBS2|F6RBS2_CIOIN Uncharacterized protein OS=Ciona inte 0.00031 20.6 0.0 0.00076 19.3 0.0 1.7 2 tr|F6RNA2|F6RNA2_CIOIN Williams-Beuren syndrome chromosomal 0.00047 20.0 0.0 0.002 17.9 0.0 2.1 1 tr|F7B763|F7B763_CIOIN Uncharacterized protein OS=Ciona inte 0.00086 19.1 0.0 0.0032 17.2 0.0 1.9 1 tr|H2Y3J5|H2Y3J5_CIOIN Uncharacterized protein OS=Ciona inte 0.00094 19.0 0.1 0.0021 17.9 0.1 1.5 1 tr|F6ZTX9|F6ZTX9_CIOIN Uncharacterized protein OS=Ciona inte 0.0011 18.8 0.0 0.0034 17.1 0.0 1.9 1 tr|H2XT31|H2XT31_CIOIN uncharacterized protein LOC101242218 0.0027 17.5 0.0 0.0086 15.8 0.0 1.8 1 tr|F7B757|F7B757_CIOIN Uncharacterized protein OS=Ciona inte 0.0078 16.0 0.0 0.034 13.9 0.0 2.1 2 tr|C4B8W9|C4B8W9_CIOIN Radial spoke protein AK58 OS=Ciona in 0.0087 15.8 0.0 0.03 14.1 0.0 1.8 1 tr|F7B499|F7B499_CIOIN Uncharacterized protein OS=Ciona inte ------ inclusion threshold ------ 0.012 15.4 0.1 0.059 13.1 0.1 1.9 1 tr|F6VYQ8|F6VYQ8_CIOIN uncharacterized protein LOC100177375 0.039 13.7 0.0 0.31 10.8 0.0 2.1 1 tr|F6XYB7|F6XYB7_CIOIN Methyltransferase-like protein OS=Cio 0.086 12.6 0.0 0.24 11.1 0.0 1.7 1 tr|F6S0S0|F6S0S0_CIOIN carnosine N-methyltransferase OS=Cion 0.096 12.4 0.2 3 7.5 0.0 3.0 4 tr|H2XY27|H2XY27_CIOIN 2-methoxy-6-polyprenyl-1,4-benzoquino Domain annotation for each sequence (and alignments): >> tr|F6WNH2|F6WNH2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 164.9 0.0 3.1e-51 2.2e-48 2 132 .. 187 315 .] 186 315 .] 0.97 Alignments for each domain: == domain 1 score: 164.9 bits; conditional E-value: 3.1e-51 XXXXX-HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHH CS Methyltransf_8 2 leakikkrldgarfrflneklytgesskavdlfkedpeafdlyhkgfrsqvkkWPenPldviirklkkkkdnlvvadlGcGeakiae 88 l++++ k+l+++rfrf+ne++y+ +s++ + f d +af++yh+gf+ qv WP+nPld ii+++k++ +lv+ad+GcGea +a+ tr|F6WNH2|F6WNH2_CIOIN 187 LKDRLVKKLESSRFRFINEQIYSQSSEATIKTFSSDQSAFEIYHRGFTAQVATWPVNPLDLIIKWIKERSPKLVIADFGCGEAELAK 273 78999*********************************************************************************7 PP H--S-..EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES-- CS Methyltransf_8 89 avrekekvrsfdlvavnervvacdlakvPledesvdvavfclsl 132 +v++k v+sfdlvavn++v++ d+++vPl d s+dv+vf lsl tr|F6WNH2|F6WNH2_CIOIN 274 RVKNK--VHSFDLVAVNDQVTVADISNVPLTDASMDVVVFSLSL 315 77766..***********************************98 PP >> tr|H2XS49|H2XS49_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.5 0.0 6.8e-09 4.9e-06 41 180 .. 8 163 .. 5 174 .. 0.66 2 ? 0.0 0.0 0.81 5.9e+02 153 196 .. 168 211 .. 166 215 .. 0.83 Alignments for each domain: == domain 1 score: 26.5 bits; conditional E-value: 6.8e-09 HHHHHHHHHHHHCTS.SS-HHHHHHHHHC..TS-TTS-EEEES-TT-HHH.HH--S-..EEEEE.....SS...-SST..TEE.ES- CS Methyltransf_8 41 fdlyhkgfrsqvkkW.PenPldviirklk..kkkdnlvvadlGcGeakia.eavrekekvrsfd.....lv...avne..rvv.acd 112 f+ y +q k+ P+ P+++ l k k+ + d+GcG + ++kv ++d l + n+ +v+ tr|H2XS49|H2XS49_CIOIN 8 FRYYESKSITQKYKYrPHYPVKIAEDALGnlKEKKLDFLLDVGCGGGQAVkIFAPYFDKVLAIDpsenqLEearSQNKfaHVTyEVG 94 666665544444443388888877666653233334568899999877552334456777777733222211112232223331234 PP T.TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEE CS Methyltransf_8 113 l.akvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevksrfesvklfaraltklGfev 180 l k+P +d svdv+ + +l + ++f +e+ rvlk+GG +v ++ ++ ++ +kl ++ tr|H2XS49|H2XS49_CIOIN 95 LaEKLPCNDVSVDVITVASALHWLDRQKFYEEVDRVLKPGGREIYLQVCNKYAQIYNEIKYAKKLRYDH 163 4589*************************************9888888888888877777777777765 PP == domain 2 score: 0.0 bits; conditional E-value: 0.81 EEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE CS Methyltransf_8 153 llkvaevksrfesvklfaraltklGfevkskdlsnkqfvlfefk 196 ++ ++e+k ++s++ ++ ++ + ++ ++ +++ + l+e+ tr|H2XS49|H2XS49_CIOIN 168 VWSITELKGYIQSIDSYETYMKDIEMQLEEFSEKERKAKLLELD 211 58999999999999999999999999888888888877777765 PP >> tr|H2Y1L1|H2Y1L1_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 28.2 0.0 1.9e-09 1.4e-06 114 176 .. 95 158 .. 16 176 .. 0.80 Alignments for each domain: == domain 1 score: 28.2 bits; conditional E-value: 1.9e-09 TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG.G-S-HHHHHHHHHCT CS Methyltransf_8 114 akvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevks.rfesvklfaraltkl 176 +P+++esvdv+v + n++ flke +rvlk+GG l v + +s +f l +++ ++l tr|H2Y1L1|H2Y1L1_CIOIN 95 EDLPAANESVDVVVSGSATHWYNVEAFLKETERVLKPGGTLVVLDYNSpKFLPLGLNTKNAEEL 158 579***************************************9988774555555555555555 PP >> tr|H2XWY6|H2XWY6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.6 0.0 6.1e-09 4.4e-06 113 173 .. 133 192 .. 61 240 .. 0.83 Alignments for each domain: == domain 1 score: 26.6 bits; conditional E-value: 6.1e-09 TTS-S--TT-EEEEEEES---SS-HHH.HHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHH CS Methyltransf_8 113 lakvPledesvdvavfclslmgtnlad.flkeanrvlkvGGllkvaevksrfesvklfaral 173 +k+P+edes dv+v+ + t +++ +k++ rvlk+GGl++ + ++ + f +++ tr|H2XWY6|H2XWY6_CIOIN 133 TTKLPIEDESYDVIVCTGGFSRTHIQSeCIKDVVRVLKPGGLFWFCVRN--TKQAENFNKEV 192 579**********************96379*************976332..23445555555 PP >> tr|F6ZIX6|F6ZIX6_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 GN=LOC100181209 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 0.5 0.1 0.59 4.3e+02 74 87 .. 73 86 .. 68 113 .. 0.69 2 ! 22.8 0.1 8.5e-08 6.2e-05 118 160 .. 143 186 .. 136 199 .. 0.87 Alignments for each domain: == domain 1 score: 0.5 bits; conditional E-value: 0.59 S-EEEES-TT-HHH CS Methyltransf_8 74 lvvadlGcGeakia 87 + + dlGcG + tr|F6ZIX6|F6ZIX6_CIOIN 73 VKILDLGCGSGRDC 86 5699*****87744 PP == domain 2 score: 22.8 bits; conditional E-value: 8.5e-08 --TT-EEEEEE.ES---SS-HHHHHHHHHHHEEEEEEEEEEEEG CS Methyltransf_8 118 ledesvdvavf.clslmgtnladflkeanrvlkvGGllkvaevk 160 +ed+s+d+a+ c+ + ++ ++ ke++rvlk+GG ++ +++ tr|F6ZIX6|F6ZIX6_CIOIN 143 IEDSSIDIAISnCVVNLCEDKESVYKEVYRVLKPGGEFYFSDIY 186 69*******955**************************999885 PP >> tr|H2XS53|H2XS53_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.7 0.0 2.3e-08 1.7e-05 116 161 .. 143 189 .. 97 202 .. 0.77 Alignments for each domain: == domain 1 score: 24.7 bits; conditional E-value: 2.3e-08 -S--TT-EEEEEE.ES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG CS Methyltransf_8 116 vPledesvdvavf.clslmgtnladflkeanrvlkvGGllkvaevks 161 +ed s+d+++ c+ ++++ + lkea+rvlk GG l+ ++v + tr|H2XS53|H2XS53_CIOIN 143 AGIEDTSMDIVISnCVINLVKDKEAVLKEAYRVLKYGGELYFSDVYA 189 4689*******9559999***********************999865 PP >> tr|H2XVH5|H2XVH5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 24.5 0.0 2.7e-08 2e-05 114 155 .. 59 100 .. 3 106 .. 0.90 Alignments for each domain: == domain 1 score: 24.5 bits; conditional E-value: 2.7e-08 TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEE CS Methyltransf_8 114 akvPledesvdvavfclslmgtnladflkeanrvlkvGGllk 155 k+P +d svdv++ s+ + ++f +ea rvlk+GG l tr|H2XVH5|H2XVH5_CIOIN 59 EKLPCDDVSVDVIIAGASVHWFDRQKFYEEADRVLKPGGRLV 100 699************************************986 PP >> tr|H2XNZ2|H2XNZ2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 23.6 0.0 5.2e-08 3.8e-05 114 161 .. 96 143 .. 16 171 .. 0.86 Alignments for each domain: == domain 1 score: 23.6 bits; conditional E-value: 5.2e-08 TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG CS Methyltransf_8 114 akvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevks 161 +P++ esvd++v + n++ f ke +rvlk+GG l v + s tr|H2XNZ2|H2XNZ2_CIOIN 96 EDLPVAKESVDMVVAGAATHWFNVEAFFKETERVLKPGGTLVVLDYDS 143 469**************************************9988766 PP >> tr|F6ZXR3|F6ZXR3_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.5 0.1 1.1e-07 8.1e-05 106 156 .. 44 94 .. 1 97 [. 0.68 2 ? -3.0 0.0 6.8 4.9e+03 77 102 .. 129 154 .. 114 161 .. 0.66 Alignments for each domain: == domain 1 score: 22.5 bits; conditional E-value: 1.1e-07 TTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEE CS Methyltransf_8 106 ervvacdlakvPledesvdvavfclslmgtnladflkeanrvlkvGGllkv 156 + d k+P + +svdv+++ ++ ++ +fl+e+ rvl++ G + + tr|F6ZXR3|F6ZXR3_CIOIN 44 VSYAVGDAYKLPFDTSSVDVVMCGEAIHFFDVDKFLREVARVLRPQGCVAI 94 234578999************************************998765 PP == domain 2 score: -3.0 bits; conditional E-value: 6.8 EEES-TT-HHHHH--S-..EEEEESS CS Methyltransf_8 77 adlGcGeakiaeavrekekvrsfdlv 102 l c i e+ + + kv+ dl+ tr|F6ZXR3|F6ZXR3_CIOIN 129 SHLTCEYKDIYEQLSSPVKVHNTDLK 154 45566666666777777777777776 PP >> tr|F6UYV3|F6UYV3_CIOIN uncharacterized protein LOC100187144 OS=Ciona intestinalis OX=7719 GN=LOC100187144 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 22.1 0.0 1.4e-07 0.0001 116 157 .. 54 96 .. 45 156 .. 0.80 Alignments for each domain: == domain 1 score: 22.1 bits; conditional E-value: 1.4e-07 -S--TT-EEEEEEES---SS-H.HHHHHHHHHHEEEEEEEEEE CS Methyltransf_8 116 vPledesvdvavfclslmgtnl.adflkeanrvlkvGGllkva 157 vPl+d s dv+ +c sl l a+ + e+ r+lk+GG+++ + tr|F6UYV3|F6UYV3_CIOIN 54 VPLDDASYDVITCCASLSPRSLpASTVLEMVRLLKPGGYIWYT 96 9******************999467899**********87754 PP >> tr|F6RBS2|F6RBS2_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.9 0.0 3.3e-07 0.00024 58 156 .. 25 138 .. 2 206 .. 0.73 Alignments for each domain: == domain 1 score: 20.9 bits; conditional E-value: 3.3e-07 -HHHHHHHHHC..TS-TTS-EEEES-TT-HHH........HH--S-..EEEEESS-SSTT...E..EES-TTS-S--TT-EEEEEEE CS Methyltransf_8 58 nPldviirklk..kkkdnlvvadlGcGeakia........eavrekekvrsfdlvavner...v..vacdlakvPledesvdvavfc 129 + + +++k++ +k d+ +d+GcG + + + v+ ++ + ++++ v + ++ +ed s d+ v tr|F6RBS2|F6RBS2_CIOIN 25 ELARFVVNKMRskNKTDSSEKVDVGCGSGQATnifapyfkKVLATDPSVNQLEHARMQNKfdnVsyEEGTAENIKVEDCSLDLLVAG 111 3345677888733455667789999998876533234332222333345555555555441113112334589************** PP S---SS-HHHHHHHHHHHEEEEEEEEE CS Methyltransf_8 130 lslmgtnladflkeanrvlkvGGllkv 156 +l + +fl+ea rvlk+GG++ + tr|F6RBS2|F6RBS2_CIOIN 112 CALPYFDHPKFLQEADRVLKPGGYMAL 138 ***********************9865 PP >> tr|F6RNA2|F6RNA2_CIOIN Williams-Beuren syndrome chromosomal region 27 protein-like OS=Ciona intestinalis OX=7719 GN= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.0 1.9 1.4e+03 43 89 .. 26 77 .. 13 100 .. 0.57 2 ! 19.3 0.0 1.1e-06 0.00076 116 165 .. 120 171 .. 105 223 .. 0.77 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 1.9 HHHHHHHHHHCTS....SS-HHHHHHHHHC.TS-TTS-EEEES-TT-HHHHH CS Methyltransf_8 43 lyhkgfrsqvkkW....PenPldviirklk.kkkdnlvvadlGcGeakiaea 89 y + +++ +k P+ d++ + + ++nl v d+ G +a + tr|F6RNA2|F6RNA2_CIOIN 26 EYANHYEEDCMKLgytePKVATDMLKQVMSnFEDENLQVLDVAAGTGLVADN 77 5555555555554111122233333333332244566677777777666644 PP == domain 2 score: 19.3 bits; conditional E-value: 1.1e-06 -S--TT-EEEEEEES---SS-HH.HHHHHHHHHEEEEEEEEEE.EEGGG-S- CS Methyltransf_8 116 vPledesvdvavfclslmgtnla.dflkeanrvlkvGGllkva.evksrfes 165 +P +d+s dv+++ sl + ++ + +ke rv k GGl+ + +sr tr|F6RNA2|F6RNA2_CIOIN 120 LPYDDSSYDVVICLGSLSVPHVQpEAIKEFMRVTKCGGLIIFSvATTSRSAG 171 89**********999***99998578************87543134566553 PP >> tr|F7B763|F7B763_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.0 2.7e-06 0.002 75 156 .. 41 135 .. 6 191 .. 0.69 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 2.7e-06 -EEEES-TT-HHH.HH--S-..EEEEE.....SS...-SST..TEEES.-T.TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHE CS Methyltransf_8 75 vvadlGcGeakia.eavrekekvrsfd.....lv...avne..rvvac.dl.akvPledesvdvavfclslmgtnladflkeanrvl 148 + d+GcG + +++v ++d l+ + n+ +v+ + k+P ++ svdv+ s + +f +ea rvl tr|F7B763|F7B763_CIOIN 41 FLLDVGCGGGQSVnIFAPYFHEVLAIDpsenqLKearSQNKfaHVTYKqGIaEKLPCDNVSVDVITSGTSAHWFDRPKFYEEADRVL 127 456777766553313344555565555222222111122222233322134479********************************* PP EEEEEEEE CS Methyltransf_8 149 kvGGllkv 156 k+GG l + tr|F7B763|F7B763_CIOIN 128 KPGGRLVI 135 ****9987 PP >> tr|H2Y3J5|H2Y3J5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.2 0.0 4.4e-06 0.0032 76 155 .. 43 142 .. 20 161 .. 0.64 Alignments for each domain: == domain 1 score: 17.2 bits; conditional E-value: 4.4e-06 EEEES-TT-HHH.HH--S-..EEEEESS-SS.......TTEEE...S-T.TS-S--TT-EEEEEEE.S--..-SS-H.....HHHHH CS Methyltransf_8 76 vadlGcGeakia.eavrekekvrsfdlvavn.......ervva...cdl.akvPledesvdvavfc.lsl..mgtnl.....adflk 142 + d+GcG + a +++v ++d + ++v + + ++P++d svdv+ + + gt + ++f k tr|H2Y3J5|H2Y3J5_CIOIN 43 LLDVGCGAGRSAnVFAPYSHDVLAIDPSENElkearflKQVHVtykTGIaEELPVDDASVDVITAAsVDVitAGTSVhwfvrEKFFK 129 57888888888832334567777777433221111122333321113454789*******996543133311455551222246789 PP HHHHHEEEEEEEE CS Methyltransf_8 143 eanrvlkvGGllk 155 e+ rvlk+GG l tr|H2Y3J5|H2Y3J5_CIOIN 130 EVDRVLKPGGRLV 142 9*********885 PP >> tr|F6ZTX9|F6ZTX9_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.9 0.1 2.9e-06 0.0021 53 156 .. 371 485 .. 342 518 .. 0.69 Alignments for each domain: == domain 1 score: 17.9 bits; conditional E-value: 2.9e-06 CTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-..E...EEEESS-SSTT....EEES-TTS-S--TT-EEEEEEES-- CS Methyltransf_8 53 kkWPenPldviirklkkkkdnlvvadlGcGeakiaeavrekekv...rsfdlvavner....vvacdlakvPledesvdvavfclsl 132 e+P ++++ l++ + vv d+GcG + +++ + rs+ l + ++ +c+ k+P+ ++s d ++ +++ tr|F6ZTX9|F6ZTX9_CIOIN 371 SSTREKPWPHVVEFLQSLPRASVVLDVGCGSGRYLGVCQQHFMLgcdRSVSLINICKQknfpSFVCNGLKLPVREGSFDACIC-IAV 456 45567899999********************9987333333222222445555443331112679**************7665.444 PP -...SS-HH..HHHHHHHHHEEEEEEEEE CS Methyltransf_8 133 m...gtnla..dflkeanrvlkvGGllkv 156 + +t+ + + +ke r +++GG + + tr|F6ZTX9|F6ZTX9_CIOIN 457 IhhyATEKRriQAIKELLRAVRIGGKILI 485 31224544322679***********8766 PP >> tr|H2XT31|H2XT31_CIOIN uncharacterized protein LOC101242218 isoform X1 OS=Ciona intestinalis OX=7719 GN=LOC101242218 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.1 0.0 4.7e-06 0.0034 114 161 .. 131 179 .. 28 203 .. 0.85 Alignments for each domain: == domain 1 score: 17.1 bits; conditional E-value: 4.7e-06 TS-S--TT-EEEEEEES---SS-HH.HHHHHHHHHEEEEEEEEEEEEGG CS Methyltransf_8 114 akvPledesvdvavfclslmgtnla.dflkeanrvlkvGGllkvaevks 161 ++ +d+s dv+v + t ++ + +ke+ r+lk+GGl++ + ks tr|H2XT31|H2XT31_CIOIN 131 ERMTYDDDSYDVIVSIGGFSRTHIQpECIKEVLRILKPGGLFWFSVRKS 179 467789******************9568**************9876555 PP >> tr|F7B757|F7B757_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.8 0.0 1.2e-05 0.0086 113 156 .. 91 135 .. 9 141 .. 0.69 Alignments for each domain: == domain 1 score: 15.8 bits; conditional E-value: 1.2e-05 T.TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEE CS Methyltransf_8 113 l.akvPledesvdvavfclslmgtnladflkeanrvlkvGGllkv 156 + k+P +d svdv+ + ++ + +f +e+ rvlk+ G l + tr|F7B757|F7B757_CIOIN 91 IaEKLPCDDVSVDVITVGTAIHWLDRPKFYEEVTRVLKPNGRLII 135 4479*************************************9987 PP >> tr|C4B8W9|C4B8W9_CIOIN Radial spoke protein AK58 OS=Ciona intestinalis OX=7719 GN=Ci-AK58 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 13.9 0.0 4.7e-05 0.034 33 80 .. 16 64 .. 12 96 .. 0.77 2 ? -2.2 0.0 3.9 2.8e+03 132 183 .. 91 146 .. 77 158 .. 0.71 Alignments for each domain: == domain 1 score: 13.9 bits; conditional E-value: 4.7e-05 HHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-.EEEES CS Methyltransf_8 33 lfkedpeafdlyhkgfrsqvkkWPenPldviirklkkkkdnlv.vadlG 80 ++ e+ +fd+y ++ + + P++Pl+ +i +lk+ ++n++ +a +G tr|C4B8W9|C4B8W9_CIOIN 16 VYAEEHGIFDMYKRLLCQLIIDKPVEPLQYLIDWLKRDNSNISkIAVIG 64 6789999*****************************9998875477777 PP == domain 2 score: -2.2 bits; conditional E-value: 3.9 --SS-HHHHHHHHHHHEE....EEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE CS Methyltransf_8 132 lmgtnladflkeanrvlk....vGGllkvaevksrfesvklfaraltklGfevksk 183 l+ ++l d +ea++++ v l+v ++ r++ + + r + Gf ++ tr|C4B8W9|C4B8W9_CIOIN 91 LLDDELSDAANEAKKLIStsqaVTDKLWVQMIEERLKRKDCLRRGFVLEGFPQNRE 146 56667777777777776511113457899999999998888888888888877655 PP >> tr|F7B499|F7B499_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.1 0.0 4.1e-05 0.03 111 154 .. 126 170 .. 63 177 .. 0.76 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 4.1e-05 S-TTS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEE CS Methyltransf_8 111 cdlakvPledesvdvavfclslm.gtnladflkeanrvlkvGGll 154 ++P de+ d+++ +sl +++l ke+ rvlk+ G + tr|F7B499|F7B499_CIOIN 126 FGEENLPFRDETFDMVLTSMSLHwVNDLPACFKEVLRVLKPDGCF 170 444799****************64899*************99975 PP >> tr|F6VYQ8|F6VYQ8_CIOIN uncharacterized protein LOC100177375 OS=Ciona intestinalis OX=7719 GN=LOC100177375 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.1 8.2e-05 0.059 114 156 .. 137 180 .. 40 192 .. 0.78 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 8.2e-05 TS-S--TT-EEEEEEES---SS-HH.HHHHHHHHHEEEEEEEEE CS Methyltransf_8 114 akvPledesvdvavfclslmgtnla.dflkeanrvlkvGGllkv 156 + +P + ++ +v+v+c +++ ++ + l ++ rv+k GGll+ tr|F6VYQ8|F6VYQ8_CIOIN 137 SPLPHDSNAYNVVVCCCAMVPALIQpECLPDMVRVVKCGGLLYF 180 4578999999********999999846899***********996 PP >> tr|F6XYB7|F6XYB7_CIOIN Methyltransferase-like protein OS=Ciona intestinalis OX=7719 GN=LOC100181090 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 0.00042 0.31 109 155 .. 137 190 .. 15 194 .. 0.67 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 0.00042 EES-T....TS-S--TT-EEEE..EEES---SS-HHHH.HHHHHHHEEEEEEEE CS Methyltransf_8 109 vacdl....akvPledesvdva..vfclslmgtnladf.lkeanrvlkvGGllk 155 cdl ++++svd++ +f ls + + +f l+++++vlk+GG+l tr|F6XYB7|F6XYB7_CIOIN 137 FQCDLgtdhLSYTIQENSVDLVtlIFVLSAIHPDKFEFvLRNIHKVLKPGGYLL 190 46777431123468999***975589999988776655379**********985 PP >> tr|F6S0S0|F6S0S0_CIOIN carnosine N-methyltransferase OS=Ciona intestinalis OX=7719 GN=LOC100177315 PE=4 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 0.00033 0.24 109 185 .. 256 344 .. 248 352 .. 0.65 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 0.00033 EES-TTS-S--TT-EEEEEEES--.-SS-HHHHHHHHHHHEEEEEEEE...........EEEEGGG-S.-HHHHHHHHHCTTEEEEE CS Methyltransf_8 109 vacdlakvPledesvdvavfclsl.mgtnladflkeanrvlkvGGllk...........vaevksrfe.svklfaraltklGfevks 182 a d+ +v ++ + d + c + + n+ ++++ ++ +lk+GG++ v++ +s +e s + ++ ++k+Gf++k+ tr|F6S0S0|F6S0S0_CIOIN 256 AAGDFLEVYTDEAAWDCVATCYFIdTAHNIISYIERIYHILKPGGVWVnlgpllyhfygVSN-ESSVElSYEEVVGIVEKVGFQIKK 341 5678888889999999999998883578*****************98521111111111111.122223555555556777777766 PP EE- CS Methyltransf_8 183 kdl 185 d tr|F6S0S0|F6S0S0_CIOIN 342 SDW 344 665 PP >> tr|H2XY27|H2XY27_CIOIN 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Ciona intestinalis OX=7719 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.4 0.0 2.2 1.6e+03 64 90 .. 20 46 .. 5 70 .. 0.55 2 ? -2.0 0.0 3.4 2.5e+03 99 114 .. 111 126 .. 82 131 .. 0.69 3 ? 7.5 0.0 0.0042 3 135 158 .. 174 197 .. 166 217 .. 0.87 4 ? 0.6 0.0 0.56 4e+02 155 184 .. 234 263 .. 225 268 .. 0.87 Alignments for each domain: == domain 1 score: -1.4 bits; conditional E-value: 2.2 HHHHCTS-TTS-EEEES-TT-HHHHH- CS Methyltransf_8 64 irklkkkkdnlvvadlGcGeakiaeav 90 r++ +++n + +G ++ + e+ tr|H2XY27|H2XY27_CIOIN 20 NRNVGTQNANPEITHFGFKNVTVKEKP 46 444444444444444444444443222 PP == domain 2 score: -2.0 bits; conditional E-value: 3.4 EESS-SSTTEEES-TT CS Methyltransf_8 99 fdlvavnervvacdla 114 + ++++v++cd++ tr|H2XY27|H2XY27_CIOIN 111 LQHDCPEPNVTVCDIN 126 4445678899999985 PP == domain 3 score: 7.5 bits; conditional E-value: 0.0042 S-HHHHHHHHHHHEEEEEEEEEEE CS Methyltransf_8 135 tnladflkeanrvlkvGGllkvae 158 t + + lkea+rvl +GG + e tr|H2XY27|H2XY27_CIOIN 174 THIDKVLKEAYRVLEPGGRFLCLE 197 78999*************876655 PP == domain 4 score: 0.6 bits; conditional E-value: 0.56 EEEEEGGG-S-HHHHHHHHHCTTEEEEEEE CS Methyltransf_8 155 kvaevksrfesvklfaraltklGfevkskd 184 ++ae +f+s +f + + Gf+ +s + tr|H2XY27|H2XY27_CIOIN 234 YLAESIRKFPSRSQFSQMMRDAGFQNVSCE 263 78999999****************998765 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (219 nodes) Target sequences: 16678 (5370518 residues searched) Passed MSV filter: 455 (0.0272814); expected 333.6 (0.02) Passed bias filter: 327 (0.0196067); expected 333.6 (0.02) Passed Vit filter: 48 (0.00287804); expected 16.7 (0.001) Passed Fwd filter: 23 (0.00137906); expected 0.2 (1e-05) Initial search space (Z): 16678 [actual number of targets] Domain search space (domZ): 23 [number of targets reported over threshold] # CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.05 # Mc/sec: 23522.87 // [ok]