# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_8.hmm.txt # target sequence database: proteomes/Petromyzon_marinus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_8 [M=219] Accession: PF05148.15 Description: Hypothetical methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.3e-05 22.5 0.0 0.00027 20.5 0.0 2.0 1 tr|S4RFT9|S4RFT9_PETMA Zgc:162396 OS=Petromyzon marinus OX=7 0.0024 17.3 0.0 0.0049 16.3 0.0 1.5 1 tr|S4RJ28|S4RJ28_PETMA Zgc:162396 OS=Petromyzon marinus OX=7 0.0027 17.2 0.0 0.0051 16.3 0.0 1.4 1 tr|S4RNK8|S4RNK8_PETMA Zgc:162396 OS=Petromyzon marinus OX=7 0.0042 16.6 0.0 0.017 14.6 0.0 1.9 2 tr|S4RC89|S4RC89_PETMA 2-methoxy-6-polyprenyl-1,4-benzoquino ------ inclusion threshold ------ 0.063 12.7 0.0 0.081 12.4 0.0 1.2 1 tr|S4RTW4|S4RTW4_PETMA Uncharacterized protein OS=Petromyzon Domain annotation for each sequence (and alignments): >> tr|S4RFT9|S4RFT9_PETMA Zgc:162396 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.5 0.0 9.8e-08 0.00027 36 156 .. 10 138 .. 1 148 [. 0.68 Alignments for each domain: == domain 1 score: 20.5 bits; conditional E-value: 9.8e-08 H-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS..-EEEES-TT-HHHHH--S.-..EEEEESS-S....STTE....... CS Methyltransf_8 36 edpeafdlyhkgfrsqvkkWPenPldviirklkkkkdnl..vvadlGcGeakiaeavre.kekvrsfdlvav....nerv....... 108 e+ ea++lyh g P + i+ ++ k + + +d+GcG + + ++ +v +d+ rv tr|S4RFT9|S4RFT9_PETMA 10 EHAEAYNLYHPG-------VPDAAFRAIMDYVRAKTGGVpsLAVDVGCGSGQCTRLLSRcCPRVVGVDVSEAmireATRVnrtenia 89 555666666665.......58888889999999888754215679999998888554441456777776432111122331111111 PP .EES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEE CS Methyltransf_8 109 .vacdlakvPledesvdvavfclslmgtnladflkeanrvlkvGGllkv 156 ++ k+P d+sv + + + nl df++ea rvl++GG l v tr|S4RFT9|S4RFT9_PETMA 90 yTVGTAEKLPFLDGSVGLLCATSAANVFNLPDFVREAARVLQPGGCLAV 138 13344589*********9999999999*******************987 PP >> tr|S4RJ28|S4RJ28_PETMA Zgc:162396 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 1.8e-06 0.0049 113 179 .. 52 119 .. 2 135 .. 0.78 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1.8e-06 TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S.-HHHHHHHHHCTTEE CS Methyltransf_8 113 lakvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevksrfe.svklfaraltklGfe 179 +P++d+sv + +s +l f++e++rvl++ G l + f + +f ++lt++ ++ tr|S4RJ28|S4RJ28_PETMA 52 AETLPVDDGSVSLLTAFVSAHWFDLPAFMHEVERVLQPRGCLVIYSYMYPFDiECGVFSEKLTQILWK 119 4689****************************************999999988899999999987665 PP >> tr|S4RNK8|S4RNK8_PETMA Zgc:162396 OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.3 0.0 1.9e-06 0.0051 114 179 .. 53 119 .. 2 127 .. 0.82 Alignments for each domain: == domain 1 score: 16.3 bits; conditional E-value: 1.9e-06 TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S.-HHHHHHHHHCTTEE CS Methyltransf_8 114 akvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevksrfe.svklfaraltklGfe 179 +P++d+sv + +s +l f++e++rvl++ G l + f + +f ++lt++ ++ tr|S4RNK8|S4RNK8_PETMA 53 ETLPVDDGSVSLLTAFVSAHWFDLPAFMHEVERVLQPRGCLVIYSYMYPFDiECGVFSEKLTQILWK 119 579****************************************999999988899999999987655 PP >> tr|S4RC89|S4RC89_PETMA 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Petromyzon marinus OX=7757 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.6 0.0 6.4e-06 0.017 114 159 .. 134 180 .. 125 199 .. 0.85 2 ? -1.0 0.0 0.38 1e+03 158 185 .. 219 246 .. 212 254 .. 0.74 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 6.4e-06 TS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEEEEE CS Methyltransf_8 114 akvPledesvdvavfclslm.gtnladflkeanrvlkvGGllkvaev 159 ++P +d+ d+ + + + +t + + l+ea+rvl++GG + e tr|S4RC89|S4RC89_PETMA 134 EELPFADSRFDIYSIAFGIRnVTHISVALEEAYRVLRPGGRFLCLEF 180 689*********988888753899****************9877665 PP == domain 2 score: -1.0 bits; conditional E-value: 0.38 EEGGG-S-HHHHHHHHHCTTEEEEEEE- CS Methyltransf_8 158 evksrfesvklfaraltklGfevkskdl 185 e +f++ ++f+ ++ Gf + + tr|S4RC89|S4RC89_PETMA 219 ESIRQFPDQEVFKAMIEDAGFRHVTYRN 246 5556799999999999999998766544 PP >> tr|S4RTW4|S4RTW4_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.4 0.0 3e-05 0.081 66 127 .. 35 103 .. 26 105 .] 0.74 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 3e-05 HHCTS-TTS-EEEES-TT-HHHHH--S-..E...EEEESS....-SSTTEEES-TTS-S--TT-EEEEE CS Methyltransf_8 66 klkkkkdnlvvadlGcGeakiaeavrekekv...rsfdlv....avnervvacdlakvPledesvdvav 127 l+ ++ v++d+GcG+ k ++ + ++ lv a +++v++ d ++Pl ++ +d ++ tr|S4RTW4|S4RTW4_PETMA 35 FLQGQPPGSVIVDVGCGNGKYLALNGQAFTLgcdYCLPLVqasrAKGHEVMVSDNLRLPLRNGCADAVI 103 467788889**********976555555555222567776333356789*************9999887 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (219 nodes) Target sequences: 13539 (5048892 residues searched) Passed MSV filter: 270 (0.0199424); expected 270.8 (0.02) Passed bias filter: 209 (0.0154369); expected 270.8 (0.02) Passed Vit filter: 17 (0.00125563); expected 13.5 (0.001) Passed Fwd filter: 5 (0.000369303); expected 0.1 (1e-05) Initial search space (Z): 13539 [actual number of targets] Domain search space (domZ): 5 [number of targets reported over threshold] # CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04 # Mc/sec: 27642.68 // [ok]