# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Methyltransf_8.hmm.txt
# target sequence database: proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Methyltransf_8 [M=219]
Accession: PF05148.15
Description: Hypothetical methyltransferase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.3e-05 22.5 0.0 0.00027 20.5 0.0 2.0 1 tr|S4RFT9|S4RFT9_PETMA Zgc:162396 OS=Petromyzon marinus OX=7
0.0024 17.3 0.0 0.0049 16.3 0.0 1.5 1 tr|S4RJ28|S4RJ28_PETMA Zgc:162396 OS=Petromyzon marinus OX=7
0.0027 17.2 0.0 0.0051 16.3 0.0 1.4 1 tr|S4RNK8|S4RNK8_PETMA Zgc:162396 OS=Petromyzon marinus OX=7
0.0042 16.6 0.0 0.017 14.6 0.0 1.9 2 tr|S4RC89|S4RC89_PETMA 2-methoxy-6-polyprenyl-1,4-benzoquino
------ inclusion threshold ------
0.063 12.7 0.0 0.081 12.4 0.0 1.2 1 tr|S4RTW4|S4RTW4_PETMA Uncharacterized protein OS=Petromyzon
Domain annotation for each sequence (and alignments):
>> tr|S4RFT9|S4RFT9_PETMA Zgc:162396 OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.5 0.0 9.8e-08 0.00027 36 156 .. 10 138 .. 1 148 [. 0.68
Alignments for each domain:
== domain 1 score: 20.5 bits; conditional E-value: 9.8e-08
H-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS..-EEEES-TT-HHHHH--S.-..EEEEESS-S....STTE....... CS
Methyltransf_8 36 edpeafdlyhkgfrsqvkkWPenPldviirklkkkkdnl..vvadlGcGeakiaeavre.kekvrsfdlvav....nerv....... 108
e+ ea++lyh g P + i+ ++ k + + +d+GcG + + ++ +v +d+ rv
tr|S4RFT9|S4RFT9_PETMA 10 EHAEAYNLYHPG-------VPDAAFRAIMDYVRAKTGGVpsLAVDVGCGSGQCTRLLSRcCPRVVGVDVSEAmireATRVnrtenia 89
555666666665.......58888889999999888754215679999998888554441456777776432111122331111111 PP
.EES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEE CS
Methyltransf_8 109 .vacdlakvPledesvdvavfclslmgtnladflkeanrvlkvGGllkv 156
++ k+P d+sv + + + nl df++ea rvl++GG l v
tr|S4RFT9|S4RFT9_PETMA 90 yTVGTAEKLPFLDGSVGLLCATSAANVFNLPDFVREAARVLQPGGCLAV 138
13344589*********9999999999*******************987 PP
>> tr|S4RJ28|S4RJ28_PETMA Zgc:162396 OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.3 0.0 1.8e-06 0.0049 113 179 .. 52 119 .. 2 135 .. 0.78
Alignments for each domain:
== domain 1 score: 16.3 bits; conditional E-value: 1.8e-06
TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S.-HHHHHHHHHCTTEE CS
Methyltransf_8 113 lakvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevksrfe.svklfaraltklGfe 179
+P++d+sv + +s +l f++e++rvl++ G l + f + +f ++lt++ ++
tr|S4RJ28|S4RJ28_PETMA 52 AETLPVDDGSVSLLTAFVSAHWFDLPAFMHEVERVLQPRGCLVIYSYMYPFDiECGVFSEKLTQILWK 119
4689****************************************999999988899999999987665 PP
>> tr|S4RNK8|S4RNK8_PETMA Zgc:162396 OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.3 0.0 1.9e-06 0.0051 114 179 .. 53 119 .. 2 127 .. 0.82
Alignments for each domain:
== domain 1 score: 16.3 bits; conditional E-value: 1.9e-06
TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S.-HHHHHHHHHCTTEE CS
Methyltransf_8 114 akvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevksrfe.svklfaraltklGfe 179
+P++d+sv + +s +l f++e++rvl++ G l + f + +f ++lt++ ++
tr|S4RNK8|S4RNK8_PETMA 53 ETLPVDDGSVSLLTAFVSAHWFDLPAFMHEVERVLQPRGCLVIYSYMYPFDiECGVFSEKLTQILWK 119
579****************************************999999988899999999987655 PP
>> tr|S4RC89|S4RC89_PETMA 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Petromyzon marinus OX=7757
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.6 0.0 6.4e-06 0.017 114 159 .. 134 180 .. 125 199 .. 0.85
2 ? -1.0 0.0 0.38 1e+03 158 185 .. 219 246 .. 212 254 .. 0.74
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 6.4e-06
TS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEEEEE CS
Methyltransf_8 114 akvPledesvdvavfclslm.gtnladflkeanrvlkvGGllkvaev 159
++P +d+ d+ + + + +t + + l+ea+rvl++GG + e
tr|S4RC89|S4RC89_PETMA 134 EELPFADSRFDIYSIAFGIRnVTHISVALEEAYRVLRPGGRFLCLEF 180
689*********988888753899****************9877665 PP
== domain 2 score: -1.0 bits; conditional E-value: 0.38
EEGGG-S-HHHHHHHHHCTTEEEEEEE- CS
Methyltransf_8 158 evksrfesvklfaraltklGfevkskdl 185
e +f++ ++f+ ++ Gf + +
tr|S4RC89|S4RC89_PETMA 219 ESIRQFPDQEVFKAMIEDAGFRHVTYRN 246
5556799999999999999998766544 PP
>> tr|S4RTW4|S4RTW4_PETMA Uncharacterized protein OS=Petromyzon marinus OX=7757 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.4 0.0 3e-05 0.081 66 127 .. 35 103 .. 26 105 .] 0.74
Alignments for each domain:
== domain 1 score: 12.4 bits; conditional E-value: 3e-05
HHCTS-TTS-EEEES-TT-HHHHH--S-..E...EEEESS....-SSTTEEES-TTS-S--TT-EEEEE CS
Methyltransf_8 66 klkkkkdnlvvadlGcGeakiaeavrekekv...rsfdlv....avnervvacdlakvPledesvdvav 127
l+ ++ v++d+GcG+ k ++ + ++ lv a +++v++ d ++Pl ++ +d ++
tr|S4RTW4|S4RTW4_PETMA 35 FLQGQPPGSVIVDVGCGNGKYLALNGQAFTLgcdYCLPLVqasrAKGHEVMVSDNLRLPLRNGCADAVI 103
467788889**********976555555555222567776333356789*************9999887 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (219 nodes)
Target sequences: 13539 (5048892 residues searched)
Passed MSV filter: 270 (0.0199424); expected 270.8 (0.02)
Passed bias filter: 209 (0.0154369); expected 270.8 (0.02)
Passed Vit filter: 17 (0.00125563); expected 13.5 (0.001)
Passed Fwd filter: 5 (0.000369303); expected 0.1 (1e-05)
Initial search space (Z): 13539 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04
# Mc/sec: 27642.68
//
[ok]