# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Methyltransf_8.hmm.txt # target sequence database: proteomes/Pseudomonas_aeruginosa.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Methyltransf_8 [M=219] Accession: PF05148.15 Description: Hypothetical methyltransferase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00023 19.5 0.0 0.0004 18.7 0.0 1.4 1 tr|Q9I615|Q9I615_PSEAE Malonyl-[acyl-carrier protein] O-meth 0.0032 15.7 0.0 0.0052 15.0 0.0 1.4 1 sp|Q9HUC0|UBIE_PSEAE Ubiquinone/menaquinone biosynthesis C ------ inclusion threshold ------ 0.073 11.2 0.0 0.1 10.8 0.0 1.1 1 tr|Q9I5E0|Q9I5E0_PSEAE Phospholipid methyltransferase OS=Pse Domain annotation for each sequence (and alignments): >> tr|Q9I615|Q9I615_PSEAE Malonyl-[acyl-carrier protein] O-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 156 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 2.1e-07 0.0004 107 156 .. 105 155 .. 61 160 .. 0.90 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 2.1e-07 TEEES-TTS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEE CS Methyltransf_8 107 rvvacdlakvPledesvdvavfclslm.gtnladflkeanrvlkvGGllkv 156 + + d ++Pl d+s d+ l++ +l l ea+rvl++GG+l tr|Q9I615|Q9I615_PSEAE 105 HFIGGDAERLPLRDGSCDLLFSSLAIQwCADLPAVLAEARRVLRPGGVLAF 155 56778999****************995379*****************9975 PP >> sp|Q9HUC0|UBIE_PSEAE Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas aeruginosa (strain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.0 0.0 2.8e-06 0.0052 104 160 .. 120 177 .. 90 196 .. 0.81 Alignments for each domain: == domain 1 score: 15.0 bits; conditional E-value: 2.8e-06 SSTTEEES-TTS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEEEEEG CS Methyltransf_8 104 vnervvacdlakvPledesvdvavfclslm.gtnladflkeanrvlkvGGllkvaevk 160 n v d k+P d+ d + + + l +t + ++ + rvlk+GG l v e + sp|Q9HUC0|UBIE_PSEAE 120 GNVSFVQADAEKLPFPDNHFDCVTIAFGLRnVTHKDEAIRSMLRVLKPGGRLLVLEFS 177 55667889****************99999636777889****************9975 PP >> tr|Q9I5E0|Q9I5E0_PSEAE Phospholipid methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.8 0.0 5.4e-05 0.1 108 158 .. 98 149 .. 90 166 .. 0.80 Alignments for each domain: == domain 1 score: 10.8 bits; conditional E-value: 5.4e-05 EEES-TTS-S--TT-EEEEEEES---SS-HH.HHHHHHHHHEEEEEEEEEEE CS Methyltransf_8 108 vvacdlakvPledesvdvavfclslmgtnla.dflkeanrvlkvGGllkvae 158 +va +l ++ +e es d +v+ ++l + l e++rvlk GG l e tr|Q9I5E0|Q9I5E0_PSEAE 98 MVALELGEIRAEAESFDTIVCTFTLCSIAAPlPALGEMRRVLKRGGELLFCE 149 56677889999***********99998766515689**********998877 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (219 nodes) Target sequences: 5563 (1857172 residues searched) Passed MSV filter: 104 (0.0186949); expected 111.3 (0.02) Passed bias filter: 101 (0.0181557); expected 111.3 (0.02) Passed Vit filter: 18 (0.00323566); expected 5.6 (0.001) Passed Fwd filter: 3 (0.000539277); expected 0.1 (1e-05) Initial search space (Z): 5563 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02 # Mc/sec: 20336.03 // [ok]