# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/PCIF1_WW.hmm.txt
# target sequence database:        proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       PCIF1_WW  [M=172]
Accession:   PF12237.8
Description: Phosphorylated CTD interacting factor 1 WW domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence                       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------                       -----------
  ------ inclusion threshold ------
        0.3   11.9   0.1       0.72   10.7   0.1    1.6  1  tr|A0A1X7USH4|A0A1X7USH4_AMPQE  Uncharacterized protein OS=Amphi


Domain annotation for each sequence (and alignments):
>> tr|A0A1X7USH4|A0A1X7USH4_AMPQE  Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   1.6e-05      0.72      40      80 ..     157     198 ..     146     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.6e-05
                        PCIF1_WW  40 qaalpeevfevLkkefg.vsfecfAsPlncyfeqycsafpdt 80 
                                     +++l+ ++f++L++ +g  +++ fAs  n+++ ++ s f d 
  tr|A0A1X7USH4|A0A1X7USH4_AMPQE 157 DWSLNPAMFQTLNNLWGaYTVDRFASSQNSQLLRFNSRFWDA 198
                                     5799************95689******************874 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (172 nodes)
Target sequences:                        43435  (14716620 residues searched)
Passed MSV filter:                      1015  (0.0233683); expected 868.7 (0.02)
Passed bias filter:                      765  (0.0176125); expected 868.7 (0.02)
Passed Vit filter:                        56  (0.00128928); expected 43.4 (0.001)
Passed Fwd filter:                         1  (2.30229e-05); expected 0.4 (1e-05)
Initial search space (Z):              43435  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.10
# Mc/sec: 25312.59
//
[ok]