# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/PCIF1_WW.hmm.txt
# target sequence database: proteomes/Drosophila_melanogaster.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: PCIF1_WW [M=172]
Accession: PF12237.8
Description: Phosphorylated CTD interacting factor 1 WW domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-66 222.2 0.9 4.1e-66 221.5 0.9 1.4 1 tr|Q9VPB7|Q9VPB7_DROME FI17508p1 OS=Drosophila melanogaster
------ inclusion threshold ------
0.062 12.5 0.0 0.13 11.5 0.0 1.6 1 sp|P22465|ANX10_DROME Annexin B10 OS=Drosophila melanogaste
Domain annotation for each sequence (and alignments):
>> tr|Q9VPB7|Q9VPB7_DROME FI17508p1 OS=Drosophila melanogaster OX=7227 GN=Dmel\CG11399 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 221.5 0.9 5.9e-70 4.1e-66 1 172 [] 517 690 .. 517 690 .. 0.98
Alignments for each domain:
== domain 1 score: 221.5 bits; conditional E-value: 5.9e-70
PCIF1_WW 1 kLkeLyesseeddekleaflsrvfalllrYdallg........eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycsafpd 79
kL++Ly+++++dd+k++ f rv++ll+rY+++lg ++ +qaalp vfe+L+++fgvsfecfAsP+n+yf+qycsaf+d
tr|Q9VPB7|Q9VPB7_DROME 517 KLEQLYRHNCFDDKKFDLFIGRVWCLLKRYQTFLGnalnssqeAELTQAALPVPVFECLHRQFGVSFECFASPFNSYFRQYCSAFAD 603
8***************************************9988899**************************************** PP
PCIF1_WW 80 tDayFGsvGsffdfkpasgsfeanPPfveevleraaehieklLeaaeeesepLsfvvvvpewretealkkleesrykrkevvieake 166
tDayFGs+G+f+dfkp+sgsf++nPP++ee++e+ + hi+klL+++ epLsf+v++pew++ ++kl++s ykr+++v+ ++
tr|Q9VPB7|Q9VPB7_DROME 604 TDAYFGSRGPFLDFKPVSGSFQVNPPHCEELIEASLLHIDKLLTDT---MEPLSFIVFLPEWKS---ISKLDDSMYKRRSMVVLGMA 684
**********************************************...9************76...699***************** PP
PCIF1_WW 167 heyreg 172
heyr+g
tr|Q9VPB7|Q9VPB7_DROME 685 HEYRHG 690
****97 PP
>> sp|P22465|ANX10_DROME Annexin B10 OS=Drosophila melanogaster OX=7227 GN=AnxB10 PE=2 SV=3
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 1.9e-05 0.13 23 66 .. 207 249 .. 178 266 .. 0.84
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 1.9e-05
PCIF1_WW 23 vfalllrYdallgeaglqaalpeevfevLkkefgvsfecfAsPl 66
+ ++ Y+ l+g +++++a+++e+ + L++++ +ec sP
sp|P22465|ANX10_DROME 207 LRLVFEEYKVLSG-QTIEQAIKHEMSDELHEAMMAIVECVQSPA 249
4566778******.99***************************5 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (172 nodes)
Target sequences: 13786 (7394964 residues searched)
Passed MSV filter: 382 (0.0277093); expected 275.7 (0.02)
Passed bias filter: 265 (0.0192224); expected 275.7 (0.02)
Passed Vit filter: 18 (0.00130567); expected 13.8 (0.001)
Passed Fwd filter: 2 (0.000145075); expected 0.1 (1e-05)
Initial search space (Z): 13786 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:00.04
# Mc/sec: 31798.35
//
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