# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/PCIF1_WW.hmm.txt # target sequence database: proteomes/Drosophila_melanogaster.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: PCIF1_WW [M=172] Accession: PF12237.8 Description: Phosphorylated CTD interacting factor 1 WW domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-66 222.2 0.9 4.1e-66 221.5 0.9 1.4 1 tr|Q9VPB7|Q9VPB7_DROME FI17508p1 OS=Drosophila melanogaster ------ inclusion threshold ------ 0.062 12.5 0.0 0.13 11.5 0.0 1.6 1 sp|P22465|ANX10_DROME Annexin B10 OS=Drosophila melanogaste Domain annotation for each sequence (and alignments): >> tr|Q9VPB7|Q9VPB7_DROME FI17508p1 OS=Drosophila melanogaster OX=7227 GN=Dmel\CG11399 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 221.5 0.9 5.9e-70 4.1e-66 1 172 [] 517 690 .. 517 690 .. 0.98 Alignments for each domain: == domain 1 score: 221.5 bits; conditional E-value: 5.9e-70 PCIF1_WW 1 kLkeLyesseeddekleaflsrvfalllrYdallg........eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycsafpd 79 kL++Ly+++++dd+k++ f rv++ll+rY+++lg ++ +qaalp vfe+L+++fgvsfecfAsP+n+yf+qycsaf+d tr|Q9VPB7|Q9VPB7_DROME 517 KLEQLYRHNCFDDKKFDLFIGRVWCLLKRYQTFLGnalnssqeAELTQAALPVPVFECLHRQFGVSFECFASPFNSYFRQYCSAFAD 603 8***************************************9988899**************************************** PP PCIF1_WW 80 tDayFGsvGsffdfkpasgsfeanPPfveevleraaehieklLeaaeeesepLsfvvvvpewretealkkleesrykrkevvieake 166 tDayFGs+G+f+dfkp+sgsf++nPP++ee++e+ + hi+klL+++ epLsf+v++pew++ ++kl++s ykr+++v+ ++ tr|Q9VPB7|Q9VPB7_DROME 604 TDAYFGSRGPFLDFKPVSGSFQVNPPHCEELIEASLLHIDKLLTDT---MEPLSFIVFLPEWKS---ISKLDDSMYKRRSMVVLGMA 684 **********************************************...9************76...699***************** PP PCIF1_WW 167 heyreg 172 heyr+g tr|Q9VPB7|Q9VPB7_DROME 685 HEYRHG 690 ****97 PP >> sp|P22465|ANX10_DROME Annexin B10 OS=Drosophila melanogaster OX=7227 GN=AnxB10 PE=2 SV=3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.5 0.0 1.9e-05 0.13 23 66 .. 207 249 .. 178 266 .. 0.84 Alignments for each domain: == domain 1 score: 11.5 bits; conditional E-value: 1.9e-05 PCIF1_WW 23 vfalllrYdallgeaglqaalpeevfevLkkefgvsfecfAsPl 66 + ++ Y+ l+g +++++a+++e+ + L++++ +ec sP sp|P22465|ANX10_DROME 207 LRLVFEEYKVLSG-QTIEQAIKHEMSDELHEAMMAIVECVQSPA 249 4566778******.99***************************5 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 13786 (7394964 residues searched) Passed MSV filter: 382 (0.0277093); expected 275.7 (0.02) Passed bias filter: 265 (0.0192224); expected 275.7 (0.02) Passed Vit filter: 18 (0.00130567); expected 13.8 (0.001) Passed Fwd filter: 2 (0.000145075); expected 0.1 (1e-05) Initial search space (Z): 13786 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.10u 0.00s 00:00:00.10 Elapsed: 00:00:00.04 # Mc/sec: 31798.35 // [ok]