# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/PCIF1_WW.hmm.txt
# target sequence database:        proteomes/Mus_musculus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       PCIF1_WW  [M=172]
Accession:   PF12237.8
Description: Phosphorylated CTD interacting factor 1 WW domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    2.2e-70  236.1   0.2    3.3e-70  235.5   0.2    1.3  1  sp|P59114|PCIF1_MOUSE  Phosphorylated CTD-interacting factor 


Domain annotation for each sequence (and alignments):
>> sp|P59114|PCIF1_MOUSE  Phosphorylated CTD-interacting factor 1 OS=Mus musculus OX=10090 GN=Pcif1 PE=1 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.5   0.2   1.5e-74   3.3e-70       1     172 []     445     620 ..     445     620 .. 0.99

  Alignments for each domain:
  == domain 1  score: 235.5 bits;  conditional E-value: 1.5e-74
               PCIF1_WW   1 kLkeLyesseeddekleaflsrvfalllrYdallg.....eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycsafpdtDay 83 
                            kL  Ly++s+ dd+ +e fl rv++ll+rY++++g     ++glq++lp +vfe+L++ fgvsfecfAsPlncyf+qycsafpdtD+y
  sp|P59114|PCIF1_MOUSE 445 KLWLLYRYSCVDDSAFERFLPRVWCLLRRYQMMFGvglyeGTGLQGSLPVHVFETLHRLFGVSFECFASPLNCYFRQYCSAFPDTDGY 532
                            7899***********************************99*********************************************** PP

               PCIF1_WW  84 FGsvGsffdfkpasgsfeanPPfveevleraaehieklLeaaeeesepLsfvvvvpewre..tealkkleesrykrkevvieakehey 169
                            FGs+G+++df+p sgsfeanPPf+ee+++++++h+eklLe++    epLsf+v++pewre  t al+++e+sr+kr+++v++a ehey
  sp|P59114|PCIF1_MOUSE 533 FGSRGPCLDFTPLSGSFEANPPFCEELMDAMVSHFEKLLESS---AEPLSFIVFIPEWREppTPALTRMEQSRFKRHQLVLPAFEHEY 617
                            ******************************************...9**************999************************* PP

               PCIF1_WW 170 reg 172
                            r+g
  sp|P59114|PCIF1_MOUSE 618 RSG 620
                            986 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (172 nodes)
Target sequences:                        22289  (11757923 residues searched)
Passed MSV filter:                       597  (0.0267845); expected 445.8 (0.02)
Passed bias filter:                      453  (0.0203239); expected 445.8 (0.02)
Passed Vit filter:                        27  (0.00121136); expected 22.3 (0.001)
Passed Fwd filter:                         1  (4.48652e-05); expected 0.2 (1e-05)
Initial search space (Z):              22289  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.07
# Mc/sec: 28890.90
//
[ok]