# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/PCIF1_WW.hmm.txt # target sequence database: proteomes/Pan_troglodytes.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: PCIF1_WW [M=172] Accession: PF12237.8 Description: Phosphorylated CTD interacting factor 1 WW domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.5e-70 234.0 0.1 1.4e-69 233.5 0.1 1.2 1 tr|A0A2I3TMU7|A0A2I3TMU7_PANTR PDX1 C-terminal inhibiting facto ------ inclusion threshold ------ 0.014 15.3 0.0 0.031 14.2 0.0 1.5 1 tr|H2Q9U6|H2Q9U6_PANTR Sorting nexin OS=Pan troglodytes Domain annotation for each sequence (and alignments): >> tr|A0A2I3TMU7|A0A2I3TMU7_PANTR PDX1 C-terminal inhibiting factor 1 OS=Pan troglodytes OX=9598 GN=PCIF1 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 233.5 0.1 1.2e-73 1.4e-69 1 172 [] 446 621 .. 446 621 .. 0.99 Alignments for each domain: == domain 1 score: 233.5 bits; conditional E-value: 1.2e-73 PCIF1_WW 1 kLkeLyesseeddekleaflsrvfalllrYdallg.....eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqyc 74 kL Ly++s+ dd+ +e fl rv++ll+rY++++g ++glq++lp +vfe+L++ fgvsfecfAsPlncyf+qyc tr|A0A2I3TMU7|A0A2I3TMU7_PANTR 446 KLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFGvglyeGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYC 524 7899***********************************99************************************** PP PCIF1_WW 75 safpdtDayFGsvGsffdfkpasgsfeanPPfveevleraaehieklLeaaeeesepLsfvvvvpewre..tealkkle 151 safpdtD+yFGs+G+++df+p sgsfeanPPf+ee+++++++h+e+lLe++ epLsf+v++pewre t al+++e tr|A0A2I3TMU7|A0A2I3TMU7_PANTR 525 SAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVSHFERLLESS---PEPLSFIVFIPEWREppTPALTRME 600 ***************************************************...***************999******* PP PCIF1_WW 152 esrykrkevvieakeheyreg 172 +sr+kr++++++a eheyr+g tr|A0A2I3TMU7|A0A2I3TMU7_PANTR 601 QSRFKRHQLILPAFEHEYRSG 621 ******************986 PP >> tr|H2Q9U6|H2Q9U6_PANTR Sorting nexin OS=Pan troglodytes OX=9598 GN=SNX33 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 2.7e-06 0.031 92 123 .. 420 451 .. 408 460 .. 0.85 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2.7e-06 PCIF1_WW 92 dfkpasgsfeanPPfveevleraaehieklLe 123 +f+++s sf++ PPf++e l++a++h ++ e tr|H2Q9U6|H2Q9U6_PANTR 420 AFQAISHSFQMDPPFCSEALNSAISHTGRTYE 451 58899*******************99877655 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (172 nodes) Target sequences: 23008 (11942255 residues searched) Passed MSV filter: 581 (0.0252521); expected 460.2 (0.02) Passed bias filter: 434 (0.018863); expected 460.2 (0.02) Passed Vit filter: 28 (0.00121697); expected 23.0 (0.001) Passed Fwd filter: 2 (8.69263e-05); expected 0.2 (1e-05) Initial search space (Z): 23008 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.07 # Mc/sec: 29343.83 // [ok]