# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/PCIF1_WW.hmm.txt
# target sequence database: proteomes/Strongylocentrotus_purpuratus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: PCIF1_WW [M=172]
Accession: PF12237.8
Description: Phosphorylated CTD interacting factor 1 WW domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-67 226.9 0.1 4.2e-67 225.7 0.1 1.7 1 tr|W4ZDW6|W4ZDW6_STRPU Anoctamin OS=Strongylocentrotus purpu
1.8e-67 226.9 0.1 3.1e-67 226.2 0.1 1.4 1 tr|W4Y0L1|W4Y0L1_STRPU Uncharacterized protein OS=Strongyloc
0.0053 17.0 0.1 0.013 15.8 0.1 1.6 1 tr|W4YIF3|W4YIF3_STRPU Uncharacterized protein OS=Strongyloc
0.0054 17.0 0.1 0.014 15.7 0.1 1.7 1 tr|W4YLQ8|W4YLQ8_STRPU Uncharacterized protein OS=Strongyloc
0.0079 16.5 0.0 0.016 15.5 0.0 1.6 1 tr|W4YJ56|W4YJ56_STRPU Uncharacterized protein OS=Strongyloc
------ inclusion threshold ------
0.19 12.0 0.0 0.29 11.4 0.0 1.2 1 tr|W4XWR7|W4XWR7_STRPU Uncharacterized protein OS=Strongyloc
Domain annotation for each sequence (and alignments):
>> tr|W4ZDW6|W4ZDW6_STRPU Anoctamin OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 225.7 0.1 8.9e-71 4.2e-67 1 170 [. 38 211 .. 38 213 .. 0.99
Alignments for each domain:
== domain 1 score: 225.7 bits; conditional E-value: 8.9e-71
PCIF1_WW 1 kLkeLyesseeddekleaflsrvfalllrYdallg.....eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycsafpdtDa 82
kL++Ly+ +++dd+++++fl r+++ll+rY++l+g +++lq+alp+ vf++L+++fgv+fecfAsPlncyf+qycsaf dtD+
tr|W4ZDW6|W4ZDW6_STRPU 38 KLDALYQFNCRDDPTRHNFLPRAWCLLRRYQTLFGlgeneGHNLQGALPTGVFKALNEHFGVTFECFASPLNCYFKQYCSAFVDTDS 124
899***********************************999********************************************** PP
PCIF1_WW 83 yFGsvGsffdfkpasgsfeanPPfveevleraaehieklLeaaeeesepLsfvvvvpewre..tealkkleesrykrkevvieakeh 167
yFGs+G+++df p sgsfeanPPf ee++e+++ h+eklLe++ ++pLsf+v++p+wr+ t+alk le+sr+kr++ vi+a+eh
tr|W4ZDW6|W4ZDW6_STRPU 125 YFGSRGPILDFFPFSGSFEANPPFGEELMEATVIHFEKLLERT---TDPLSFIVFTPDWRDpiTNALKMLEASRFKRRQEVIPAYEH 208
*******************************************...9***************99*********************** PP
PCIF1_WW 168 eyr 170
eyr
tr|W4ZDW6|W4ZDW6_STRPU 209 EYR 211
**8 PP
>> tr|W4Y0L1|W4Y0L1_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 226.2 0.1 6.5e-71 3.1e-67 1 170 [. 504 677 .. 504 679 .. 0.99
Alignments for each domain:
== domain 1 score: 226.2 bits; conditional E-value: 6.5e-71
PCIF1_WW 1 kLkeLyesseeddekleaflsrvfalllrYdallg.....eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycsafpdtDa 82
kL++Ly+ +++dd+++++fl r+++ll+rY++l+g +++lq+alp+ vf++L+++fgv+fecfAsPlncyf+qycsaf dtD+
tr|W4Y0L1|W4Y0L1_STRPU 504 KLDALYQFNCRDDPTRHNFLPRAWCLLRRYQTLFGlgeneGHNLQGALPTGVFKALNEHFGVTFECFASPLNCYFKQYCSAFVDTDS 590
899***********************************999********************************************** PP
PCIF1_WW 83 yFGsvGsffdfkpasgsfeanPPfveevleraaehieklLeaaeeesepLsfvvvvpewre..tealkkleesrykrkevvieakeh 167
yFGs+G+++df p sgsfeanPPf ee++e+++ h+eklLe++ ++pLsf+v++p+wr+ t+alk le+sr+kr++ vi+a+eh
tr|W4Y0L1|W4Y0L1_STRPU 591 YFGSRGPILDFFPFSGSFEANPPFGEELMEATVIHFEKLLERT---TDPLSFIVFTPDWRDpiTNALKMLEASRFKRRQEVIPAYEH 674
*******************************************...9***************99*********************** PP
PCIF1_WW 168 eyr 170
eyr
tr|W4Y0L1|W4Y0L1_STRPU 675 EYR 677
**8 PP
>> tr|W4YIF3|W4YIF3_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.8 0.1 2.7e-06 0.013 38 117 .. 1005 1080 .. 990 1104 .. 0.81
Alignments for each domain:
== domain 1 score: 15.8 bits; conditional E-value: 2.7e-06
PCIF1_WW 38 glqaalpeevfevLkkefg.vsfecfAsPlncyfeqycsafpdtDayFGsvGsffdfkpasgsfeanPPfveevleraaeh 117
+++ l++e+f+ + ++fg +++ fAs ln+++e+y+s+ pd a + + f ++ ++ f a+PPf+ +++r++++
tr|W4YIF3|W4YIF3_STRPU 1005 RTEWMLSKEAFAKIVQKFGkPEIDIFASRLNTQLERYISWLPDPNAE---AVDAFTLDWEKFEFYAFPPFC--LVARCIQK 1080
5678899999999999997579*********************9875...557777888889999999999..34444444 PP
>> tr|W4YLQ8|W4YLQ8_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.7 0.1 3e-06 0.014 39 110 .. 373 444 .. 362 460 .. 0.80
Alignments for each domain:
== domain 1 score: 15.7 bits; conditional E-value: 3e-06
PCIF1_WW 39 lqaalpeevfevLkkefgv.sfecfAsPlncyfeqycsafpdtDayFGsvGsffdfkpasgsfeanPPfv..eev 110
+++ l+ e f+ + fg +++ fAs ln+++++y+s+ pd a sv + f+++ ++ +f a+PPf+ ++
tr|W4YLQ8|W4YLQ8_STRPU 373 TEWMLNREDFHKVVSFFGLpEIDLFASRLNAQLSRYVSWLPDPNAE--SV-DAFSLNWREFNFYAFPPFCliPKC 444
5666777888888888885489*******************99885..55.66788999999*******944444 PP
>> tr|W4YJ56|W4YJ56_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.5 0.0 3.4e-06 0.016 36 111 .. 90 165 .. 74 243 .. 0.83
Alignments for each domain:
== domain 1 score: 15.5 bits; conditional E-value: 3.4e-06
PCIF1_WW 36 eaglqaalpeevfevLkkefg.vsfecfAsPlncyfeqycsafpdtDayFGsvGsffdfkpasgsfeanPPfv..eevl 111
++++++ l++++f+ + ++fg +++ fAs ln + ++y+s+ pd a + + f ++ + sf a+PPf+ ++l
tr|W4YJ56|W4YJ56_STRPU 90 NHKTEWMLNTDAFKEIAQQFGsPEIDLFASRLNKQVDRYISWLPDPGAE---TVDAFTIDWKPLSFYAFPPFCliAKCL 165
57889999************9569********************98764...345555566667899999999444444 PP
>> tr|W4XWR7|W4XWR7_STRPU Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.4 0.0 6.1e-05 0.29 36 75 .. 270 309 .. 262 333 .. 0.80
Alignments for each domain:
== domain 1 score: 11.4 bits; conditional E-value: 6.1e-05
PCIF1_WW 36 eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycs 75
+++ +++ + +f++Lk++++ + e f P+n++++ +
tr|W4XWR7|W4XWR7_STRPU 270 DTSKESSNLAVMFDTLKRKLENNPETFKEPVNAMYHTFQK 309
555666667789************************9975 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (172 nodes)
Target sequences: 28594 (14266044 residues searched)
Passed MSV filter: 689 (0.024096); expected 571.9 (0.02)
Passed bias filter: 564 (0.0197244); expected 571.9 (0.02)
Passed Vit filter: 21 (0.00073442); expected 28.6 (0.001)
Passed Fwd filter: 6 (0.000209834); expected 0.3 (1e-05)
Initial search space (Z): 28594 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.10
# Mc/sec: 24537.60
//
[ok]