# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/PCIF1_WW.hmm.txt
# target sequence database: proteomes/Trypanosoma_brucei.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: PCIF1_WW [M=172]
Accession: PF12237.8
Description: Phosphorylated CTD interacting factor 1 WW domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-36 124.0 0.5 1.3e-35 121.5 0.3 1.9 2 tr|Q582D4|Q582D4_TRYB2 Uncharacterized protein OS=Trypanosom
1.6e-12 46.3 0.0 3e-12 45.4 0.0 1.5 1 tr|Q57YM3|Q57YM3_TRYB2 Uncharacterized protein OS=Trypanosom
Domain annotation for each sequence (and alignments):
>> tr|Q582D4|Q582D4_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.5 0.3 3e-39 1.3e-35 16 141 .. 447 578 .. 436 592 .. 0.89
2 ? -0.1 0.0 0.067 2.9e+02 148 172 .] 631 655 .. 625 655 .. 0.89
Alignments for each domain:
== domain 1 score: 121.5 bits; conditional E-value: 3e-39
PCIF1_WW 16 leaflsrvfalllrYdallg....eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycsafpdtDayFGsvGsffdfkpasg 98
e f r+f+lllrY++l+g ++g +aa+p ++++ L + f++++e+fAsPln+++ +cs fpdtD +FGs+Gsffd++ + g
tr|Q582D4|Q582D4_TRYB2 447 VEPFFMRLFTLLLRYSSLFGdlgyNQGPHAAVPPAIMQQLCQVFDIQCEAFASPLNAQLPLFCSLFPDTDYFFGSLGSFFDIALTAG 533
567999**************999999************************************************************* PP
PCIF1_WW 99 sfeanPPfveevleraaeh.ieklLeaaeees.epLsfvvvvpew 141
fe+nPPfv vl+r + ++++L ++++ + fvvv+p+
tr|Q582D4|Q582D4_TRYB2 534 HFEVNPPFVTAVLQRLEKLlLKDTLPINDSDGaASMLFVVVLPSH 578
***************8775246789888776636899******65 PP
== domain 2 score: -0.1 bits; conditional E-value: 0.067
PCIF1_WW 148 kkleesrykrkevvieakeheyreg 172
++l+es+y+ ++v+ +a+e y++g
tr|Q582D4|Q582D4_TRYB2 631 RALRESPYCLAHVLCSAHESVYVDG 655
7899******************997 PP
>> tr|Q57YM3|Q57YM3_TRYB2 Uncharacterized protein OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.4 0.0 7e-16 3e-12 15 104 .. 251 376 .. 229 411 .. 0.90
Alignments for each domain:
== domain 1 score: 45.4 bits; conditional E-value: 7e-16
PCIF1_WW 15 kleaflsrvfalllrYdallgeaglqaalpeevfevLkkefgvsfecfAsPlncyfe.............................. 71
+++ f+ r+ +l lrY+ +l++ +lq + + L+ + ++ +AsP+n+y
tr|Q57YM3|Q57YM3_TRYB2 251 YEKCFTLRAATLALRYECCLATGSLQLCADLRLKQHLHANGYRVIDLCASPINAYMGepkegsylvgesraeeksssevndsfigce 337
5678999**************9*****************99999******************************************* PP
PCIF1_WW 72 ....qycsafpdtDayFGsvGsffdfkpas..gsfeanP 104
++csafpdtD yFGs+Gs+++f+ ++ + ++nP
tr|Q57YM3|Q57YM3_TRYB2 338 ntpnHFCSAFPDTDCYFGSLGSVLKFDVVQayNTPQINP 376
************************998776334445555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (172 nodes)
Target sequences: 8561 (4332363 residues searched)
Passed MSV filter: 217 (0.0253475); expected 171.2 (0.02)
Passed bias filter: 166 (0.0193903); expected 171.2 (0.02)
Passed Vit filter: 12 (0.00140171); expected 8.6 (0.001)
Passed Fwd filter: 2 (0.000233618); expected 0.1 (1e-05)
Initial search space (Z): 8561 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.06u 0.00s 00:00:00.06 Elapsed: 00:00:00.03
# Mc/sec: 24838.88
//
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