# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/PCIF1_WW.hmm.txt
# target sequence database:        proteomes/Xenopus_tropicalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       PCIF1_WW  [M=172]
Accession:   PF12237.8
Description: Phosphorylated CTD interacting factor 1 WW domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
      8e-68  227.8   0.4    1.2e-67  227.3   0.4    1.3  1  tr|Q28DF7|Q28DF7_XENTR  Novel WW domain containing protein (O


Domain annotation for each sequence (and alignments):
>> tr|Q28DF7|Q28DF7_XENTR  Novel WW domain containing protein (Ortholog of human C20orf67) OS=Xenopus tropicalis OX=8364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.3   0.4   4.9e-72   1.2e-67       1     172 []     442     617 ..     442     617 .. 0.99

  Alignments for each domain:
  == domain 1  score: 227.3 bits;  conditional E-value: 4.9e-72
                PCIF1_WW   1 kLkeLyesseeddekleaflsrvfalllrYdallg.....eaglqaalpeevfevLkkefgvsfecfAsPlncyfeqycsafpdtDa 82 
                             kL +Ly+ s+ dd+ +e flsrv++ll+rY+ ++g     ++glq+alp +vf++L+k fgv++ecfAsPlncyf+qycsaf+dtD+
  tr|Q28DF7|Q28DF7_XENTR 442 KLYQLYRLSCIDDSGTERFLSRVWCLLRRYQVMFGtaqyeGSGLQGALPVHVFQTLHKVFGVTLECFASPLNCYFKQYCSAFTDTDG 528
                             899**********************************9999********************************************** PP

                PCIF1_WW  83 yFGsvGsffdfkpasgsfeanPPfveevleraaehieklLeaaeeesepLsfvvvvpewre..tealkkleesrykrkevvieakeh 167
                             yFGs+G++++f p+sgsfeanPPf+ee+++++++h+e+lLe++   ++pLsf++++pewr+  t al+++e+sr+kr++++++a +h
  tr|Q28DF7|Q28DF7_XENTR 529 YFGSRGPCLSFFPVSGSFEANPPFSEELMDAMVTHFENLLESS---DQPLSFIIFIPEWRDppTPALTRMESSRFKRHQLLLTAFQH 612
                             *******************************************...9***************99*********************** PP

                PCIF1_WW 168 eyreg 172
                             eyr+g
  tr|Q28DF7|Q28DF7_XENTR 613 EYRSG 617
                             **986 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (172 nodes)
Target sequences:                        24182  (11782085 residues searched)
Passed MSV filter:                       610  (0.0252254); expected 483.6 (0.02)
Passed bias filter:                      463  (0.0191465); expected 483.6 (0.02)
Passed Vit filter:                        21  (0.000868415); expected 24.2 (0.001)
Passed Fwd filter:                         1  (4.13531e-05); expected 0.2 (1e-05)
Initial search space (Z):              24182  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.08
# Mc/sec: 25331.48
//
[ok]