# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Pox_MCEL.hmm.txt # target sequence database: proteomes/Ciona_intestinalis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Pox_MCEL [M=333] Accession: PF03291.15 Description: mRNA capping enzyme Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.6e-91 306.7 4.6 2.1e-91 306.4 4.6 1.1 1 tr|F6YXT8|F6YXT8_CIOIN mRNA cap guanine-N7 methyltransferase Domain annotation for each sequence (and alignments): >> tr|F6YXT8|F6YXT8_CIOIN mRNA cap guanine-N7 methyltransferase OS=Ciona intestinalis OX=7719 GN=LOC100184027 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 306.4 4.6 1.3e-95 2.1e-91 7 332 .. 36 372 .. 30 373 .. 0.92 Alignments for each domain: == domain 1 score: 306.4 bits; conditional E-value: 1.3e-95 Pox_MCEL 7 esevtdlvathynerpetgellkkRiastiiylrnlnNyiKslLiseyasktkldesnklkvLdldcgkGgDLeKyekgeIsklvat 93 ++++++lva+hyn+r +t+ ++R +s+i+y+rn+nN+ Ks+Li +y+ + + vLdl+cgkGgD K++k++ +lv+t tr|F6YXT8|F6YXT8_CIOIN 36 DHANSKLVAEHYNKRGNTS--CAERRNSKIFYMRNFNNWTKSVLIRKYTDALYHVGVAHPVVLDLGCGKGGDVLKWDKARPRHLVCT 120 567789***********99..9******************************999999***************************** PP Pox_MCEL 94 DiaeesieeckeRYnklrsekkskyykFdaelirsdsfvssvrevfedyelkfdivslQFaiHYsFeseekartvlrNvaellasGG 180 D ae+s+ +ckeRY l++++++ + F+ae+i +ds +++++e++ed++l fdi s+QF++HY+Fese ka+t+++N+++ l++GG tr|F6YXT8|F6YXT8_CIOIN 121 DLAETSVSQCKERYALLKRRNRN-RQFFSAEFIVADSSTENLKEKLEDTNLMFDITSCQFVVHYTFESEDKAETMVKNACNNLKEGG 206 **************766666655.467************************************************************ PP Pox_MCEL 181 kvlgTtpdgdelskltvkklkviekdlpsfgNsiyvvkfeeekievplfGakYeynledvvkdvpEyivkfealvklaeeYgleLvd 267 +++gTt+++++l + +k + d sfgN++y v+fe +k e p f +kY ++l dvv ++pE+++k+e+lv+l+++ +++Lv+ tr|F6YXT8|F6YXT8_CIOIN 207 YFFGTTVNSEKL----INSVKKS--DGLSFGNNVYDVTFE-NKEEFPEFACKYIFQLHDVV-NCPEFLLKKETLVRLCKKHNMRLVE 285 ************....4444444..789************.778889**************.************************* PP Pox_MCEL 268 kkdfaeiieesikke.lkklikrvskleerkstknf.....................eelnrsalkstlgkdeeealsyYlvfvfeK 332 k+f+e++ee+ + + + +li+r+++le +++ + ++ tl+k e+ea+s+Y+vf+f K tr|F6YXT8|F6YXT8_CIOIN 286 WKTFSEFFEENSRPKeNFRLIQRMKSLEVFPPNGEPlnsavegdyehaqlecdrineKYPGSKTRVATLSKTEWEAASIYVVFAFVK 372 *********987655599************998766788*************9998533344555679*****************98 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (333 nodes) Target sequences: 16678 (5370518 residues searched) Passed MSV filter: 854 (0.0512052); expected 333.6 (0.02) Passed bias filter: 330 (0.0197865); expected 333.6 (0.02) Passed Vit filter: 26 (0.00155894); expected 16.7 (0.001) Passed Fwd filter: 1 (5.99592e-05); expected 0.2 (1e-05) Initial search space (Z): 16678 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.14u 0.00s 00:00:00.14 Elapsed: 00:00:00.05 # Mc/sec: 35767.65 // [ok]