# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Pox_MCEL.hmm.txt # target sequence database: proteomes/Drosophila_melanogaster.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Pox_MCEL [M=333] Accession: PF03291.15 Description: mRNA capping enzyme Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-124 415.2 0.1 1.6e-124 415.0 0.1 1.1 1 sp|Q9VJQ4|MCES_DROME mRNA cap guanine-N7 methyltransferase 0.002 17.0 0.0 0.003 16.4 0.0 1.4 1 sp|Q9VJK8|JHAMT_DROME Juvenile hormone acid O-methyltransfer Domain annotation for each sequence (and alignments): >> sp|Q9VJQ4|MCES_DROME mRNA cap guanine-N7 methyltransferase OS=Drosophila melanogaster OX=7227 GN=Rnmt PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 415.0 0.1 2.4e-128 1.6e-124 2 333 .] 73 411 .. 72 411 .. 0.97 Alignments for each domain: == domain 1 score: 415.0 bits; conditional E-value: 2.4e-128 Pox_MCEL 2 geaetesevtdlvathynerpetgellkkRiastiiylrnlnNyiKslLiseyasktkl..desnklkvLdldcgkGgDLeKyekgeIs 88 +ea++ +++t++va+hyne++e+g +k+R++s+i+++rn+nN+iKs+Li+ey+s+ k+ ++ ++l+vLd++cgkGgDL K+ek++Is sp|Q9VJQ4|MCES_DROME 73 TEAASGAANTHVVAHHYNELKEAG--RKDRQKSKIFFMRNFNNWIKSQLINEYMSQIKQnkRMGDALRVLDMCCGKGGDLLKWEKAAIS 159 577888999***************..8****************************9988657899************************ PP Pox_MCEL 89 klvatDiaeesieeckeRY..nklrsekkskyykFdaelirsdsfvssvrevfedyelkfdivslQFaiHYsFeseekartvlrNvael 175 +l++tDiae+s+e+c++RY +rsek++ ++kF+ae++++ds+ +++re+++d++l++++vs+QFa+HY+Fes+++a++++rN+ae+ sp|Q9VJQ4|MCES_DROME 160 HLICTDIAEVSVEQCQRRYqdILQRSEKSKFANKFTAEFFACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAEC 248 *******************98899***************************************************************** PP Pox_MCEL 176 lasGGkvlgTtpdgdelskltvkklkviekdlpsfgNsiyvvkfeeekievplfGakYeynledvvkdvpEyivkfealvklaeeYgle 264 l++GG++++T+pd++e+ +++l+++ +d+++fgN++y+++f++e++ plfGakY+++le+vv d+pE++v+f++lvkl ++Ygl+ sp|Q9VJQ4|MCES_DROME 249 LKPGGFFIATMPDAYEI----IRRLRAAGPDARRFGNDVYSIEFDCETDPLPLFGAKYQFHLEGVV-DCPEFLVHFPTLVKLGRKYGLQ 332 *****************....*********************************************.********************** PP Pox_MCEL 265 Lvdkkdfaeiieesikkelkklikrvskleerkstknf...........eelnrsalkstlgkdeeealsyYlvfvfeKr 333 L+++++fa++++e++++ ++l++r+s le++++++ ++++rs++ +tl+k+e+ea+++Ylv++f+K+ sp|Q9VJQ4|MCES_DROME 333 LLKRSTFADYYKENLHH-GRHLLQRMSGLESVQPQRCEndeefahvsnfQGAQRSRSVGTLSKSEWEAATLYLVCAFKKC 411 **************877.9***************995588999999999*****************************96 PP >> sp|Q9VJK8|JHAMT_DROME Juvenile hormone acid O-methyltransferase OS=Drosophila melanogaster OX=7227 GN=jhamt PE=1 SV= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.4 0.0 4.3e-07 0.003 49 192 .. 20 150 .. 5 193 .. 0.74 Alignments for each domain: == domain 1 score: 16.4 bits; conditional E-value: 4.3e-07 Pox_MCEL 49 lLiseyasktkldesnklkvLdldcgkGgDLeKyekgeI...sklvatDiaeesieeckeRYnklrsekkskyykFdaelirsdsfvs 133 l+++e+as + ++ + ++Ld++ g G L + k + +lv+tDi+ + ++ +++ Y +r+e+++ F++ i ++ sp|Q9VJK8|JHAMT_DROME 20 LILDEFASTMQWRSDGEDALLDVGSGSGNVLMDFVKPLLpirGQLVGTDISSQMVHYASKHY--QREERTR----FQVLDIGCE---- 97 678999999999999999**********9888887765422479******************..4444444....888877775.... PP Pox_MCEL 134 svrevfedyelkfdivslQFaiHYsFeseekartvlrNvaellas.GGkvlgTtpdgdel 192 ++ e + +++fd v +++H+ + + +l N+ +ll++ GG l ++ + sp|Q9VJK8|JHAMT_DROME 98 RLPEEL---SGRFDHVTSFYCLHWVQ----NLKGALGNIYNLLKPeGGDCLLAFLASNPV 150 555555...56678888878888653....233357888888875477777777776666 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (333 nodes) Target sequences: 13786 (7394964 residues searched) Passed MSV filter: 619 (0.0449006); expected 275.7 (0.02) Passed bias filter: 276 (0.0200203); expected 275.7 (0.02) Passed Vit filter: 19 (0.00137821); expected 13.8 (0.001) Passed Fwd filter: 2 (0.000145075); expected 0.1 (1e-05) Initial search space (Z): 13786 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.17u 0.01s 00:00:00.18 Elapsed: 00:00:00.06 # Mc/sec: 41042.05 // [ok]