# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Pox_MCEL.hmm.txt # target sequence database: proteomes/Macaca_mulatta.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Pox_MCEL [M=333] Accession: PF03291.15 Description: mRNA capping enzyme Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-117 392.3 6.8 2.6e-117 391.9 6.8 1.1 1 tr|F7D7T3|F7D7T3_MACMU mRNA cap guanine-N7 methyltransferase Domain annotation for each sequence (and alignments): >> tr|F7D7T3|F7D7T3_MACMU mRNA cap guanine-N7 methyltransferase OS=Macaca mulatta OX=9544 GN=RNMT PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 391.9 6.8 1.2e-121 2.6e-117 2 332 .. 137 474 .. 136 475 .. 0.97 Alignments for each domain: == domain 1 score: 391.9 bits; conditional E-value: 1.2e-121 Pox_MCEL 2 geaetesevtdlvathynerpetgellkkRiastiiylrnlnNyiKslLiseyasktkldesnklkvLdldcgkGgDLeKyekgeIs 88 ++++ e++++++va+hyne++e g l+kR++s+i+ylrn+nN++Ks+Li+e+++k++++++++++vLdl+cgkGgDL K++kg+I+ tr|F7D7T3|F7D7T3_MACMU 137 KQKNLEEGHSSAVAAHYNELQEVG--LEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN 221 67788999****************..************************************************************* PP Pox_MCEL 89 klvatDiaeesieeckeRYnklrsekkskyykFdaelirsdsfvssvrevfedyelkfdivslQFaiHYsFeseekartvlrNvael 175 klv+tDia++si++c++RY+ +++++ s+ y F+ae+i++d+ ++ + e+f+d+++ fdi+s+QF++HYsFes e+a+++lrN++e+ tr|F7D7T3|F7D7T3_MACMU 222 KLVCTDIADVSIKQCQQRYEDMKNRRDSE-YIFSAEFITADCSKELLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACER 307 *******************9999999996.9******************************************************** PP Pox_MCEL 176 lasGGkvlgTtpdgdelskltvkklkviekdlpsfgNsiyvvkfeeekievplfGakYeynledvvkdvpEyivkfealvklaeeYg 262 l +GG+++gTtp+++el +++l+++e ++sfgN+iy+vkf+ +k +plfG+kY++nle+vv dvpE++v+f+ l ++a++Y+ tr|F7D7T3|F7D7T3_MACMU 308 LSPGGYFIGTTPNSFEL----IRRLEASE--TESFGNEIYTVKFQ-KKGDYPLFGCKYDFNLEGVV-DVPEFLVYFPLLNEMAKKYN 386 *****************....*******6..**************.89999***************.******************** PP Pox_MCEL 263 leLvdkkdfaeiieesikke.lkklikrvskleerkstknf.................eelnrsalkstlgkdeeealsyYlvfvfe 331 ++Lv+kk+f e++ee+ik++ +k+l+kr+++le +++++ + ++++++ + +tl+k+e+ea+ + +f tr|F7D7T3|F7D7T3_MACMU 387 MKLVYKKTFLEFYEEKIKNNeNKMLLKRMQALEPYPANESSklvservddyehaakymKNSQVKLPLGTLSKSEWEATMVIKDNAFD 473 *******************99******************999***************999*****************9876666665 PP Pox_MCEL 332 K 332 K tr|F7D7T3|F7D7T3_MACMU 474 K 474 5 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (333 nodes) Target sequences: 21211 (10888574 residues searched) Passed MSV filter: 851 (0.0401207); expected 424.2 (0.02) Passed bias filter: 381 (0.0179624); expected 424.2 (0.02) Passed Vit filter: 31 (0.00146151); expected 21.2 (0.001) Passed Fwd filter: 1 (4.71453e-05); expected 0.2 (1e-05) Initial search space (Z): 21211 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.25u 0.01s 00:00:00.26 Elapsed: 00:00:00.08 # Mc/sec: 45323.69 // [ok]