# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Pox_MCEL.hmm.txt # target sequence database: proteomes/Monodelphis_domestica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Pox_MCEL [M=333] Accession: PF03291.15 Description: mRNA capping enzyme Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.7e-121 403.7 4.8 9.1e-121 403.3 4.8 1.1 1 tr|F7CBQ6|F7CBQ6_MONDO mRNA cap guanine-N7 methyltransferase 0.0037 16.7 0.0 0.074 12.4 0.0 2.0 1 tr|F7F1Z8|F7F1Z8_MONDO Ubiquinone biosynthesis O-methyltrans Domain annotation for each sequence (and alignments): >> tr|F7CBQ6|F7CBQ6_MONDO mRNA cap guanine-N7 methyltransferase OS=Monodelphis domestica OX=13616 GN=RNMT PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 403.3 4.8 8.5e-125 9.1e-121 7 333 .] 145 479 .. 140 479 .. 0.98 Alignments for each domain: == domain 1 score: 403.3 bits; conditional E-value: 8.5e-125 Pox_MCEL 7 esevtdlvathynerpetgellkkRiastiiylrnlnNyiKslLiseyasktkldesnklkvLdldcgkGgDLeKyekgeIsklvat 93 +++ + va++yne++e g l+kR++s+i+ylrn+nN++Ks+Li+e+++k++++++++++vLdl+cgkGgDL K++kg+Isklv+t tr|F7CBQ6|F7CBQ6_MONDO 145 LEGHGSTVAAYYNELQEVG--LEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGKISKLVCT 229 5778999************..****************************************************************** PP Pox_MCEL 94 DiaeesieeckeRYnklrsekkskyykFdaelirsdsfvssvrevfedyelkfdivslQFaiHYsFeseekartvlrNvaellasGG 180 Dia++si++c++RY+ ++++ + + y F+ae++++ds ++ ++++f+d+e+ fdi+s+QF++HYsFe+ e+a+++lrN++ l +GG tr|F7CBQ6|F7CBQ6_MONDO 230 DIADVSIQQCQQRYTDMKNHCRDHEYIFSAEFVTADSSKELLTDKFRDPEMCFDICSCQFVYHYSFETYEQADMMLRNACGKLSPGG 316 **************99999999999************************************************************** PP Pox_MCEL 181 kvlgTtpdgdelskltvkklkviekdlpsfgNsiyvvkfeeekievplfGakYeynledvvkdvpEyivkfealvklaeeYgleLvd 267 +++gTtp+++el +k+l+++e ++sfgN+iy+++f+ +k e+plfG+kY++nle+vv dvpE++v+f+ l ++a++Y+++Lv+ tr|F7CBQ6|F7CBQ6_MONDO 317 YFIGTTPNSFEL----IKRLEASE--TESFGNEIYTIRFQ-KKGEYPLFGCKYDFNLEGVV-DVPEFLVYFPLLIEMAKKYNMKLVY 395 ************....*******6..**************.8999****************.************************* PP Pox_MCEL 268 kkdfaeiieesikke.lkklikrvskleerkstknf.................eelnrsalkstlgkdeeealsyYlvfvfeKr 333 kk+f e++ee+ik+ +k+l+kr+++le +++++n ++++++ + +tl+k+e+ea+s+Ylvf+feK+ tr|F7CBQ6|F7CBQ6_MONDO 396 KKTFLEFYEEKIKNIeNKMLLKRMQALEPYPANENAklasgnvgdyehaakymKNSQVRLPLGTLSKSEWEATSIYLVFAFEKQ 479 **************99*************************************99****************************6 PP >> tr|F7F1Z8|F7F1Z8_MONDO Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Monodelphis domestica OX=13616 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.4 0.0 7e-06 0.074 45 195 .. 124 258 .. 107 293 .. 0.71 Alignments for each domain: == domain 1 score: 12.4 bits; conditional E-value: 7e-06 Pox_MCEL 45 yiKslLiseyasktkldesnklkvLdldcgkGgDLeKyekgeIsklv.atDiaeesieeckeRYnklrsekkskyykFdaelirsds 130 +i+ L+++ a+++ + + +k+Ld++cg G L g++ lv ++D+ +e i+++++ + k+ +++a++ tr|F7F1Z8|F7F1Z8_MONDO 124 FIRDNLLKMVARHQLESPLSGMKILDVGCGGG--LLCEPLGRLGALVtGIDPLNENIKTAQQHKSF--DPILDKRIQYKACI----- 201 67888999999999999999999999999744..8888899999998679**9*999999885432..23333333344433..... PP Pox_MCEL 131 fvssvrevfedyelkfdivslQFaiHYsFeseekartvlrNvaellasGGkvlgTtpdgdelskl 195 +++++e+++ fd v + ++ e + +t ++ +++l++GG +++Tt++ +ls+ tr|F7F1Z8|F7F1Z8_MONDO 202 ----LEDIVEETAESFDAVVASEVV----EHVNDLETFIQCCCKVLKPGGSLFITTINKTQLSYA 258 ....333333445556654433332....3355667899999**************999998765 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (333 nodes) Target sequences: 21272 (11266248 residues searched) Passed MSV filter: 1102 (0.0518052); expected 425.4 (0.02) Passed bias filter: 459 (0.0215777); expected 425.4 (0.02) Passed Vit filter: 34 (0.00159835); expected 21.3 (0.001) Passed Fwd filter: 2 (9.40203e-05); expected 0.2 (1e-05) Initial search space (Z): 21272 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.27u 0.01s 00:00:00.28 Elapsed: 00:00:00.08 # Mc/sec: 46895.76 // [ok]