# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Pox_MCEL.hmm.txt # target sequence database: proteomes/Nematostella_vectensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Pox_MCEL [M=333] Accession: PF03291.15 Description: mRNA capping enzyme Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4.3e-101 338.8 3.4 5e-101 338.6 3.4 1.0 1 tr|A7S6Z4|A7S6Z4_NEMVE Predicted protein (Fragment) OS=Nemat ------ inclusion threshold ------ 0.043 13.4 0.1 0.15 11.6 0.1 1.7 2 tr|A7RKE2|A7RKE2_NEMVE Protein-lysine N-methyltransferase v1 0.059 12.9 0.1 0.43 10.1 0.0 2.3 3 tr|A7S2A7|A7S2A7_NEMVE Predicted protein OS=Nematostella vec Domain annotation for each sequence (and alignments): >> tr|A7S6Z4|A7S6Z4_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g12461 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 338.6 3.4 6.2e-105 5e-101 13 313 .. 2 294 .. 1 299 [. 0.94 Alignments for each domain: == domain 1 score: 338.6 bits; conditional E-value: 6.2e-105 Pox_MCEL 13 lvathynerpetgellkkRiastiiylrnlnNyiKslLiseyasktkldesnklkvLdldcgkGgDLeKyekgeIsklvatDiaees 99 va+hyne+pe + ++R++s+i+++rn+nN++Ks+Li+ +++k k + ++++vLdl+cgkGgDL K++ g+I +lv++Diae+s tr|A7S6Z4|A7S6Z4_NEMVE 2 TVAKHYNEHPEGS--KESRKDSRIFHMRNFNNWVKSVLIGDFLNKIKRYNYRDISVLDLCCGKGGDLLKWQRGRIRQLVCADIAEVS 86 599********55..8*********************************************************************** PP Pox_MCEL 100 ieeckeRYnklrsekkskyyk...FdaelirsdsfvssvrevfedyelkfdivslQFaiHYsFeseekartvlrNvaellasGGkvl 183 +++ckeRYn+++++ ++ +y+ F +++i++d+ ++++ + f d+el+fd+ s+QF++HYsFes e+a+++l+N++e l++GG+++ tr|A7S6Z4|A7S6Z4_NEMVE 87 VNQCKERYNEMKQTAEERRYRdgiFYTQFITADCSKERIADQFTDPELQFDLTSCQFSYHYSFESYEQADMMLKNACEKLKPGGFFI 173 ********9999999999997666888************************************************************ PP Pox_MCEL 184 gTtpdgdelskltvkklkviekdlpsfgNsiyvvkfeeekievplfGakYeynledvvkdvpEyivkfealvklaeeYgleLvdkkd 270 gTtp+g el v +l+++e +fgN++y +kfe +k pl+G+kY+++le+vv d+pE++v+f+ + k+ae+Y+++Lv +k+ tr|A7S6Z4|A7S6Z4_NEMVE 174 GTTPNGSEL----VHRLREAE--GLEFGNEVYRIKFE-NKEDFPLYGCKYDFHLEGVV-DCPEFLVYFPLFEKMAEKYDMKLVFVKT 252 *********....99999995..99************.677789**************.**************************** PP Pox_MCEL 271 faeiieesikkelkklikrvskleerkstknfeelnrsalkst 313 f+e+++ + +++ +l+ r+++le ++ ++ ++ s++ + tr|A7S6Z4|A7S6Z4_NEMVE 253 FHEFFHDH-QNDSLNLLYRMNALETYPKREGESQASSSENAYS 294 *******9.77799************99987666666665555 PP >> tr|A7RKE2|A7RKE2_NEMVE Protein-lysine N-methyltransferase v1g198391 OS=Nematostella vectensis OX=45351 GN=v1g198391 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.6 0.1 1.8e-05 0.15 54 103 .. 57 105 .. 53 125 .. 0.88 2 ? -1.0 0.0 0.12 1e+03 43 57 .. 181 195 .. 155 210 .. 0.78 Alignments for each domain: == domain 1 score: 11.6 bits; conditional E-value: 1.8e-05 Pox_MCEL 54 yasktkldesnklkvLdldcgkGgDLeKyekgeIsklvatDiaeesieec 103 +++k s++ ++Ld++cg+G L + + + l+++D ++++i+ + tr|A7RKE2|A7RKE2_NEMVE 57 WIKKCPR-ISKNSSILDVGCGNGMLLVPLAQDNYKDLLGIDYSAAAIKLA 105 6666665.78999**********************************976 PP == domain 2 score: -1.0 bits; conditional E-value: 0.12 Pox_MCEL 43 nNyiKslLiseyask 57 N+ Ks Li+++ ++ tr|A7RKE2|A7RKE2_NEMVE 181 CNWTKSELIKQFQNE 195 488888888888665 PP >> tr|A7S2A7|A7S2A7_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g101521 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.1 0.0 5.3e-05 0.43 69 107 .. 75 113 .. 66 147 .. 0.81 2 ? -0.5 0.0 0.085 7e+02 170 194 .. 153 177 .. 122 191 .. 0.75 3 ? -1.8 0.0 0.22 1.8e+03 168 194 .. 202 227 .. 193 253 .. 0.74 Alignments for each domain: == domain 1 score: 10.1 bits; conditional E-value: 5.3e-05 Pox_MCEL 69 LdldcgkGgDLeK.yekgeIsklvatDiaeesieeckeRY 107 +dl+cg+G L+K +k +I klv D ae+ +++c+e tr|A7S2A7|A7S2A7_NEMVE 75 MDLGCGRGH-LNKhLSKDQIGKLVLLDSAEKMLKQCQENE 113 799***986.66626899*******************965 PP == domain 2 score: -0.5 bits; conditional E-value: 0.085 Pox_MCEL 170 rNvaellasGGkvlgTtpdgdelsk 194 + v +l++ G ++g + +gd+l + tr|A7S2A7|A7S2A7_NEMVE 153 HQVLSCLKPDGAFVGAMFSGDTLFE 177 557789***************9944 PP == domain 3 score: -1.8 bits; conditional E-value: 0.22 Pox_MCEL 168 vlrNvaellasGGkvlgTtpdgdelsk 194 +r + +ll++ G+ l Tt+d+de+s tr|A7S2A7|A7S2A7_NEMVE 202 EMRDIGNLLTRAGYSL-TTIDSDEISV 227 5888888888888887.5679999964 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (333 nodes) Target sequences: 24428 (8257945 residues searched) Passed MSV filter: 944 (0.0386442); expected 488.6 (0.02) Passed bias filter: 472 (0.0193221); expected 488.6 (0.02) Passed Vit filter: 40 (0.00163747); expected 24.4 (0.001) Passed Fwd filter: 3 (0.00012281); expected 0.2 (1e-05) Initial search space (Z): 24428 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.06 # Mc/sec: 45831.59 // [ok]