# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Pox_MCEL.hmm.txt # target sequence database: proteomes/Pan_troglodytes.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Pox_MCEL [M=333] Accession: PF03291.15 Description: mRNA capping enzyme Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-122 407.1 7.2 9.3e-122 406.6 7.2 1.2 1 tr|H2R6V8|H2R6V8_PANTR mRNA cap guanine-N7 methyltransferase ------ inclusion threshold ------ 0.016 14.7 0.0 0.26 10.7 0.0 2.0 1 tr|H2QTG0|H2QTG0_PANTR Ubiquinone biosynthesis O-methyltrans Domain annotation for each sequence (and alignments): >> tr|H2R6V8|H2R6V8_PANTR mRNA cap guanine-N7 methyltransferase OS=Pan troglodytes OX=9598 GN=RNMT PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 406.6 7.2 8.1e-126 9.3e-122 2 333 .] 137 475 .. 136 475 .. 0.98 Alignments for each domain: == domain 1 score: 406.6 bits; conditional E-value: 8.1e-126 Pox_MCEL 2 geaetesevtdlvathynerpetgellkkRiastiiylrnlnNyiKslLiseyasktkldesnklkvLdldcgkGgDLeKyekgeIs 88 ++++ e+++++ va+hyne++e g l+kR++s+i+ylrn+nN++Ks+Li+e+++k++++++++++vLdl+cgkGgDL K++kg+I+ tr|H2R6V8|H2R6V8_PANTR 137 KQKNLEEGHSSTVAAHYNELQEVG--LEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN 221 67788999****************..************************************************************* PP Pox_MCEL 89 klvatDiaeesieeckeRYnklrsekkskyykFdaelirsdsfvssvrevfedyelkfdivslQFaiHYsFeseekartvlrNvael 175 klv+tDia++s+++c++RY+ +++++ s+ y F+ae+i++ds ++ + ++f+d+++ fdi+s+QF++HYsFes e+a+++lrN++e+ tr|H2R6V8|H2R6V8_PANTR 222 KLVCTDIADVSVKQCQQRYEDMKNRRDSE-YIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACER 307 *******************9999999996.9******************************************************** PP Pox_MCEL 176 lasGGkvlgTtpdgdelskltvkklkviekdlpsfgNsiyvvkfeeekievplfGakYeynledvvkdvpEyivkfealvklaeeYg 262 l +GG+++gTtp+++el +++l+++e ++sfgN+iy+vkf+ +k +plfG+kY++nle+vv dvpE++v+f+ l ++a++Y+ tr|H2R6V8|H2R6V8_PANTR 308 LSPGGYFIGTTPNSFEL----IRRLEASE--TESFGNEIYTVKFQ-KKGDYPLFGCKYDFNLEGVV-DVPEFLVYFPLLNEMAKKYN 386 *****************....*******6..**************.89999***************.******************** PP Pox_MCEL 263 leLvdkkdfaeiieesikke.lkklikrvskleerkstknf.................eelnrsalkstlgkdeeealsyYlvfvfe 331 ++Lv+kk+f e++ee+ik++ +k+l+kr+++le +++++ + ++++++ + +tl+k+e+ea+s+Ylvf+fe tr|H2R6V8|H2R6V8_PANTR 387 MKLVYKKTFLEFYEEKIKNNeNKMLLKRMQALEPYPANESSklvsekvddyehaakymKNSQVRLPLGTLSKSEWEATSIYLVFAFE 473 *******************99******************999***************999*************************** PP Pox_MCEL 332 Kr 333 K+ tr|H2R6V8|H2R6V8_PANTR 474 KQ 475 *6 PP >> tr|H2QTG0|H2QTG0_PANTR Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Pan troglodytes OX=9598 GN=COQ3 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.7 0.0 2.3e-05 0.26 56 195 .. 138 261 .. 114 293 .. 0.65 Alignments for each domain: == domain 1 score: 10.7 bits; conditional E-value: 2.3e-05 Pox_MCEL 56 sktkldesnklkvLdldcgkGgDLeKyekgeI.sklvatDiaeesieeckeRYnklrsekkskyykFda.elirsdsfvssvrevfe 140 +++ + +k+Ld++cg G L g++ ++ +++D+ +e i++++ s Fd r + v s++e++e tr|H2QTG0|H2QTG0_PANTR 138 NHQPGKPLLGMKILDVGCGGG--LLTEPLGRLgASVIGIDPVDENIKTAQCHK--------S----FDPvLDKRIEYRVCSLEEIVE 210 555555555678888888643..555555555256788888888887665322........2....332122233344456666666 PP Pox_MCEL 141 dyelkfdivslQFaiHYsFeseekartvlrNvaellasGGkvlgTtpdgdelskl 195 +++ fd v + ++ e +t l+ +++l++GG +++Tt++ +ls+ tr|H2QTG0|H2QTG0_PANTR 211 ETAETFDAVVASEVV----EHVIDLETFLQCCCQVLKPGGSLFITTINKTQLSYA 261 666677765544443....233455689999****************99999764 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (333 nodes) Target sequences: 23008 (11942255 residues searched) Passed MSV filter: 923 (0.0401165); expected 460.2 (0.02) Passed bias filter: 413 (0.0179503); expected 460.2 (0.02) Passed Vit filter: 46 (0.0019993); expected 23.0 (0.001) Passed Fwd filter: 2 (8.69263e-05); expected 0.2 (1e-05) Initial search space (Z): 23008 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.27u 0.01s 00:00:00.28 Elapsed: 00:00:00.09 # Mc/sec: 44186.34 // [ok]