# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Pox_MCEL.hmm.txt # target sequence database: proteomes/Pseudomonas_aeruginosa.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Pox_MCEL [M=333] Accession: PF03291.15 Description: mRNA capping enzyme Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.0038 14.7 0.0 0.0056 14.2 0.0 1.1 1 tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomona 0.0041 14.6 0.0 0.0053 14.2 0.0 1.1 1 tr|Q9I5E0|Q9I5E0_PSEAE Phospholipid methyltransferase OS=Pse Domain annotation for each sequence (and alignments): >> tr|Q9HTB1|Q9HTB1_PSEAE Uncharacterized protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.0 2e-06 0.0056 65 107 .. 60 101 .. 53 113 .. 0.85 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2e-06 Pox_MCEL 65 klkvLdldcgkGgDLeKyekgeIsklvatDiaeesieeckeRY 107 + +vLd++cg Gg + + + ++++ +Di++e i++++eR tr|Q9HTB1|Q9HTB1_PSEAE 60 EDTVLDVGCGDGGNVHFCAMR-GARIIIADIDAEKIARTRERL 101 568***********9877665.5788999************96 PP >> tr|Q9I5E0|Q9I5E0_PSEAE Phospholipid methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.0 1.9e-06 0.0053 66 106 .. 48 88 .. 35 113 .. 0.91 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.9e-06 Pox_MCEL 66 lkvLdldcgkGgDLeKyekgeIsklvatDiaeesieeckeR 106 +vL+++ g G L y+++++s +v++D+a++ + ++eR tr|Q9I5E0|Q9I5E0_PSEAE 48 GRVLEIGLGTGLNLGFYDAAKVSAIVGVDPAAQMQALARER 88 58*****************************9988888887 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (333 nodes) Target sequences: 5563 (1857172 residues searched) Passed MSV filter: 101 (0.0181557); expected 111.3 (0.02) Passed bias filter: 97 (0.0174366); expected 111.3 (0.02) Passed Vit filter: 13 (0.00233687); expected 5.6 (0.001) Passed Fwd filter: 2 (0.000359518); expected 0.1 (1e-05) Initial search space (Z): 5563 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 # Mc/sec: 20614.61 // [ok]