# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Pox_MCEL.hmm.txt
# target sequence database:        proteomes/Thermococcus_kodakarensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Pox_MCEL  [M=333]
Accession:   PF03291.15
Description: mRNA capping enzyme
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
     0.0045   13.2   0.0      0.014   11.6   0.0    1.7  1  tr|Q5JFS6|Q5JFS6_THEKO  Predicted SAM-dependent methyltransfe


Domain annotation for each sequence (and alignments):
>> tr|Q5JFS6|Q5JFS6_THEKO  Predicted SAM-dependent methyltransferase OS=Thermococcus kodakarensis (strain ATCC BAA-918 /
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.2e-06     0.014      63     139 ..      56     124 ..      44     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.2e-06
                Pox_MCEL  63 snklkvLdldcgkGgDLeKye.kgeIsklvatDiaeesieeckeRYnklrsekkskyykFdaelirsdsfvssvrevf 139
                               k kvLd++cg G    K   k +++  v++D  ee ie c++     r +k       +a++++++  +  ++e+f
  tr|Q5JFS6|Q5JFS6_THEKO  56 EVKGKVLDVGCGTGVLTFKMAlKNGVEMVVGVDRKEEVIEFCNRLGD--RVTK-------NAKFVQGNFLEMGLDEKF 124
                             45679*********99889864789*****************86441..1111.......234555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (333 nodes)
Target sequences:                         2301  (637680 residues searched)
Passed MSV filter:                        96  (0.041721); expected 46.0 (0.02)
Passed bias filter:                       75  (0.0325945); expected 46.0 (0.02)
Passed Vit filter:                         3  (0.00130378); expected 2.3 (0.001)
Passed Fwd filter:                         1  (0.000434594); expected 0.0 (1e-05)
Initial search space (Z):               2301  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02
# Mc/sec: 10617.37
//
[ok]