# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/RrnaAD.hmm.txt # target sequence database: proteomes/Amphimedon_queenslandica.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: RrnaAD [M=265] Accession: PF00398.19 Description: Ribosomal RNA adenine dimethylase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.2e-61 208.5 0.1 2.9e-61 208.1 0.1 1.1 1 tr|A0A1X7URS4|A0A1X7URS4_AMPQE rRNA adenine N(6)-methyltransfer 5.2e-35 122.1 0.0 5.8e-35 121.9 0.0 1.0 1 tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE rRNA adenine N(6)-methyltransfer 1.3e-05 25.7 0.0 0.13 12.6 0.0 2.3 2 tr|A0A1X7V1B6|A0A1X7V1B6_AMPQE Uncharacterized protein OS=Amphi 0.00096 19.6 0.0 0.0012 19.2 0.0 1.2 1 tr|A0A1X7TED2|A0A1X7TED2_AMPQE Uncharacterized protein OS=Amphi 0.001 19.5 0.2 0.0031 17.9 0.0 1.8 2 tr|A0A1X7VIN6|A0A1X7VIN6_AMPQE 2-methoxy-6-polyprenyl-1,4-benzo 0.001 19.4 0.0 0.0022 18.4 0.0 1.6 1 tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphi 0.0015 18.9 0.0 0.0018 18.7 0.0 1.1 1 tr|A0A1X7SXW7|A0A1X7SXW7_AMPQE Uncharacterized protein OS=Amphi 0.002 18.5 0.0 0.0029 18.0 0.0 1.3 1 tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE Uncharacterized protein OS=Amphi 0.0029 18.0 0.0 0.012 16.0 0.0 1.8 2 tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE Uncharacterized protein OS=Amphi 0.006 16.9 0.0 0.01 16.2 0.0 1.3 1 tr|A0A1X7UT69|A0A1X7UT69_AMPQE Uncharacterized protein OS=Amphi 0.0075 16.6 0.0 0.0098 16.2 0.0 1.2 1 tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE Uncharacterized protein OS=Amphi ------ inclusion threshold ------ 0.016 15.5 0.0 0.018 15.4 0.0 1.0 1 tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE Uncharacterized protein OS=Amphi 0.019 15.3 0.0 0.034 14.5 0.0 1.5 2 tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE Uncharacterized protein OS=Amphi 0.021 15.1 0.0 0.03 14.6 0.0 1.3 1 tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE Uncharacterized protein OS=Amphi 0.023 15.0 0.0 0.04 14.2 0.0 1.3 1 tr|A0A1X7V834|A0A1X7V834_AMPQE Uncharacterized protein OS=Amphi 0.036 14.4 0.0 0.12 12.6 0.0 1.7 2 tr|A0A1X7U4M3|A0A1X7U4M3_AMPQE Uncharacterized protein OS=Amphi 0.047 14.0 0.0 0.062 13.6 0.0 1.2 1 tr|A0A1X7VN51|A0A1X7VN51_AMPQE Uncharacterized protein OS=Amphi 0.049 14.0 0.0 0.088 13.1 0.0 1.4 1 tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE Uncharacterized protein OS=Amphi 0.057 13.7 0.0 0.076 13.3 0.0 1.3 1 tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphi 0.068 13.5 0.0 0.12 12.7 0.0 1.3 1 tr|A0A1X7UG12|A0A1X7UG12_AMPQE Uncharacterized protein OS=Amphi 0.16 12.3 0.0 0.19 12.0 0.0 1.2 1 tr|A0A1X7U4E3|A0A1X7U4E3_AMPQE Uncharacterized protein OS=Amphi 0.23 11.7 0.0 0.31 11.3 0.0 1.3 1 tr|A0A1X7UAH5|A0A1X7UAH5_AMPQE Uncharacterized protein OS=Amphi 0.26 11.6 0.0 0.56 10.5 0.0 1.4 1 tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE Uncharacterized protein OS=Amphi Domain annotation for each sequence (and alignments): >> tr|A0A1X7URS4|A0A1X7URS4_AMPQE rRNA adenine N(6)-methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 208.1 0.1 1.5e-64 2.9e-61 7 232 .. 27 243 .. 23 268 .. 0.93 Alignments for each domain: == domain 1 score: 208.1 bits; conditional E-value: 1.5e-64 GCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE- CS RrnaAD 7 sygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvh 82 gq++lkn+ +i +I++k+ l++++tvle+gpG+G++T++L++ ak+v + E d+rL+++lqk+++ +++kl+v+ tr|A0A1X7URS4|A0A1X7URS4_AMPQE 27 GKGQHILKNPLIISSIVEKAGLNPSDTVLEVGPGTGNMTVKLLDAAKKVIACEVDTRLVAELQKRVQgtpQASKLQVLV 105 569*****************************************************************999******** PP S-CCGHHHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHH CS RrnaAD 83 qDflkfetpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlr 161 D+l ++p + +vanlPy+is+++v++ll ++r+ ++ ++l++q+efa+rl+a+p++k+++rlsv++ tr|A0A1X7URS4|A0A1X7URS4_AMPQE 106 GDVLSRDLPFFS----------VCVANLPYQISSPFVFKLL-LHRPLFRCAVLMFQQEFAQRLVAKPSDKLYCRLSVNV 173 ********9955..........7******************.899999******************************* PP HHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCH CS RrnaAD 162 eaftdvklvakveksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpgg 232 ++++ v++++kv+k++f+Ppp+v+s++v++e+ +++ p ++++++ ++++++ rk+++ls+ +k++ + tr|A0A1X7URS4|A0A1X7URS4_AMPQE 174 QLLARVTHLMKVGKNNFKPPPQVESSVVRIEPFNPP-PPINYQEWDGLIQIAFQRKNRSLSATFKNKKVLE 243 ***********************************8.89************************99654444 PP >> tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE rRNA adenine N(6)-methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 121.9 0.0 3.1e-38 5.8e-35 3 184 .. 23 218 .. 21 219 .] 0.94 Alignments for each domain: == domain 1 score: 121.9 bits; conditional E-value: 3.1e-38 CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT..TCCCE CS RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls..kdekl 78 +++++++qnfl + ++ n+I++ +++ ++ v e+g+G+G+ T+++++ +v ++E+d+r++ +l+ ls +++l tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE 23 SAQQKLSQNFLLDLNLTNKIVRYADIAQSSCVCEVGSGPGAITRSILNATnAKVLAIEKDRRFLPSLEL-LSdaTNGRL 100 56889*****************************************999989**************998.555899*** PP EEE-S-CCGHHHHHHHCT.....TTCCCCEEEEEEE--TTTHHHHHHHHHH.......GGGGCEEEEEEEEEHHHHHHH CS RrnaAD 79 kvvhqDflkfetpeevte.....kdsihqeflvvanlPyeistqlvkqlle.......esrfglvkmllwlqkefarrl 145 +v h D+l+f+ p + + +++nlP +s +l ++l + g+ +m+l +qke+a+r+ tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE 101 QVCHGDILDFDWPGSCDNivtpkPWDSTGDLSIIGNLPFSVSIPLLLKWLRyltiregPFKYGRTTMTLTFQKEVAERI 179 **************8888999986677789************************99775556789************** PP H--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SS CS RrnaAD 146 larpgskkrsrlsvlreaftdvklvakveksifsPppkv 184 +a+pg +rsrls++++ ++ +k+ +++ +s f P pkv tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE 180 TAPPGHTQRSRLSIMVQSLCTAKQCLTLHSSTFVPRPKV 218 **************************************9 PP >> tr|A0A1X7V1B6|A0A1X7V1B6_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 12.6 0.0 6.6e-05 0.13 30 91 .. 75 137 .. 45 165 .. 0.80 2 ! 10.7 0.0 0.00026 0.48 20 59 .. 296 336 .. 293 360 .. 0.89 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 6.6e-05 TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGHHHH CS RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls.kdeklkvvhqDflkfetp 91 + vle+g G G + eLakrak v + l e+++k+ ++k ++++l D+ + + p tr|A0A1X7V1B6|A0A1X7V1B6_AMPQE 75 AGMDVLELGGGSGRYSGELAKRAKTVISTDLIESFLKENEEKNGpSHPNLSFRVLDAAQLDYP 137 5689*********************************99997667777777666666666555 PP == domain 2 score: 10.7 bits; conditional E-value: 0.00026 HHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE- CS RrnaAD 20 neIldklnleekltvleigpGkGilTeeLakra.kqvvvlE 59 +e l+klnl+ + vl++g G G l L k + v lE tr|A0A1X7V1B6|A0A1X7V1B6_AMPQE 296 KELLSKLNLTSDSVVLDVGCGLGGLASYLIKECdVDCVGLE 336 6789*************************999965666666 PP >> tr|A0A1X7TED2|A0A1X7TED2_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.2 0.0 6.3e-07 0.0012 18 94 .. 45 130 .. 36 193 .. 0.86 Alignments for each domain: == domain 1 score: 19.2 bits; conditional E-value: 6.3e-07 HHHHHHHHH-GG....TTSEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTT....TCCCEEEE-S-CCG CS RrnaAD 18 vineIldklnle....ekltvleigpGkGilTeeL.akrakqvvvlElderLakllqkkls....kdeklkvvhqDflk 87 ++ e l l+l e tv+++g G Gil + a+ v+++ +d++ +kl+q + + ++ +l v+++D+ + tr|A0A1X7TED2|A0A1X7TED2_AMPQE 45 LASELLISLELAeraiEGRTVIDLGCGSGILGLGClLLGAERVTAIDIDPNCVKLTQSNANdlgiSSDQLSVIQCDIKT 123 5556666677777888999************987526667******************999999*9************* PP HHHHHHH CS RrnaAD 88 fetpeev 94 +t ++ tr|A0A1X7TED2|A0A1X7TED2_AMPQE 124 IDTDKFD 130 *999855 PP >> tr|A0A1X7VIN6|A0A1X7VIN6_AMPQE 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Amphimedon queensl # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.8 0.1 6.5 1.2e+04 213 247 .. 11 48 .. 7 55 .. 0.54 2 ! 17.9 0.0 1.7e-06 0.0031 53 109 .. 126 182 .. 80 193 .. 0.72 Alignments for each domain: == domain 1 score: -3.8 bits; conditional E-value: 6.5 HHCTTTSBCCCHCCCTSTCHHHHHCTT....T--TTTC CS RrnaAD 213 llnrkrktlstslksllpggelqalsst...gindnal 247 lln + ++ ++ +++++++++s ++ ++++ tr|A0A1X7VIN6|A0A1X7VIN6_AMPQE 11 LLNNAASVINRAFTAGANNSNTEKMTSFgfqQVSEKTK 48 55666666666666666666666665543334444444 PP == domain 2 score: 17.9 bits; conditional E-value: 1.7e-06 SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCCCCEEEEEEE CS RrnaAD 53 kqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevtekdsihqeflvvan 109 qv+v+ + ++++ + +k+++++e++k+vh D+l +p++ + i ++ v+n tr|A0A1X7VIN6|A0A1X7VIN6_AMPQE 126 LQVTVVDINKEMLTEGEKRFKNNENIKWVHGDALSLPFPSNHFDAYTIAFGIRNVSN 182 389*************************************98887777766666666 PP >> tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.4 0.0 1.1e-06 0.0022 23 70 .. 24 74 .. 22 189 .. 0.58 Alignments for each domain: == domain 1 score: 18.4 bits; conditional E-value: 1.1e-06 HHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHC CS RrnaAD 23 ldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqk 70 +++l ++ek++vl++g G+G lT+ La+r+ vv + de+ +k+ + tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE 24 IEELSPQEKDKVLDLGCGTGRLTQVLAERVgpeGLVVGIDPDEERIKVAIE 74 6788999**********************9875555666666655555444 PP >> tr|A0A1X7SXW7|A0A1X7SXW7_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.7 0.0 9.5e-07 0.0018 179 259 .. 12 96 .. 8 102 .. 0.80 Alignments for each domain: == domain 1 score: 18.7 bits; conditional E-value: 9.5e-07 CS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.....T--TTTCCCCSGH CS RrnaAD 179 sPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqalsst....gindnalvkklsa 253 P+ +v ++v++++ +++ + d + +e vvr+l+ +rk ++ s k l+p + + ++ g+++ ++++l+ tr|A0A1X7SXW7|A0A1X7SXW7_AMPQE 12 NPENQVQAVVVKITPLLTPVINTDFDTLETVVRALFQYRRKMIRHSAKLLFPDEYSHLSTELflrsGVDQTLRAQQLTL 90 58999*************9999************************999998776444433222237777777777777 PP HHHHHH CS RrnaAD 254 eqtldi 259 e++ ++ tr|A0A1X7SXW7|A0A1X7SXW7_AMPQE 91 EDFKSL 96 777665 PP >> tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 18.0 0.0 1.5e-06 0.0029 22 59 .. 35 74 .. 33 124 .. 0.85 Alignments for each domain: == domain 1 score: 18.0 bits; conditional E-value: 1.5e-06 HHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE- CS RrnaAD 22 IldklnleekltvleigpGkGilTeeLakra..kqvvvlE 59 l+kl ++e++ vl++g G+G lT ++akr+ +v + tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE 35 LLKKLPIQETDVVLDLGCGTGRLTSNIAKRVinGKVIGID 74 5899**************************9544444444 PP >> tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.0 0.0 6.3e-06 0.012 30 87 .. 42 99 .. 27 120 .. 0.90 2 ? -0.8 0.0 0.83 1.6e+03 205 261 .. 222 276 .. 206 278 .. 0.74 Alignments for each domain: == domain 1 score: 16.0 bits; conditional E-value: 6.3e-06 TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCG CS RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflk 87 ++ +++ig G+G+ + L + + + +E + +++ +kk + +++k+++ +l tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE 42 KEASIVDIGCGTGNYAVALSPFVGNITGIEYNKGMMEQATKKTEHLPNVKIMEGSALS 99 5778***********************************************9987765 PP == domain 2 score: -0.8 bits; conditional E-value: 0.83 HHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCCSGHHHHHHHHH CS RrnaAD 205 kyesvvrkllnrkrktlstslksllpggelqalsstgindnalvkklsaeqtldifk 261 +++ ++++ + +l++slk + + + +++i+d +v ++++qt +i+ tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE 222 EWRNTTSIWAAATPEELEESLKDWRK-KIEDGTAQQFIDDVETV-RKRIGQTTTIVA 276 79999999999999999999995544.44455555566665555.567888877765 PP >> tr|A0A1X7UT69|A0A1X7UT69_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 5.5e-06 0.01 30 82 .. 38 88 .. 28 97 .. 0.86 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 5.5e-06 TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE- CS RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvh 82 + tvl+ig G+G+ +eL ++k+ +E ++++++ ++ + e+ k ++ tr|A0A1X7UT69|A0A1X7UT69_AMPQE 38 KRATVLDIGCGTGNYAKELSPYIKEIIGIEVNSKMIEEANN--KGIENFKTYE 88 6789*********************************9998..4445555555 PP >> tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 16.2 0.0 5.2e-06 0.0098 21 77 .. 20 79 .. 5 122 .. 0.87 Alignments for each domain: == domain 1 score: 16.2 bits; conditional E-value: 5.2e-06 HHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTTTCCC CS RrnaAD 21 eIldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkklskdek 77 + l+++n++e + +l++g G+G+ + +a+r+ vv++ d++ +++ +++l ++++ tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE 20 KLLNQMNPKEGDVLLDLGCGTGFHARDVAERVgetGRVVAVDPDRSRIEVAKNALDSNPP 79 6799****************************99889*******9999999998885543 PP >> tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 15.4 0.0 9.4e-06 0.018 18 74 .. 11 71 .. 6 81 .. 0.74 Alignments for each domain: == domain 1 score: 15.4 bits; conditional E-value: 9.4e-06 HHHHHHHHH-GG.TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...T CS RrnaAD 18 vineIldklnle.ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...k 74 ++++++ + + +++ v+++g+G Gil++ ++ ++v ++E +++a + qk ++ + tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE 11 TYQSAMLQNSIDfKDKVVVDVGAGSGILSVFAVQAGaRKVYAIEA-SSMAVHCQKLIKsnkL 71 566666666677788999***********97655545*******8.6788888886664333 PP >> tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.5 0.0 1.8e-05 0.034 30 88 .. 55 113 .. 20 175 .. 0.89 2 ? -3.0 0.0 3.8 7.2e+03 205 250 .. 235 279 .. 234 290 .. 0.60 Alignments for each domain: == domain 1 score: 14.5 bits; conditional E-value: 1.8e-05 TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGH CS RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkf 88 ++ +++ig G+G+ + L + +v+ +E + + + kk + +++k+++ +l tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE 55 KEASIVDIGCGTGNYAVALSPFVGNVTGIEYNKGMREQAIKKTEHLPNVKIMEGSALSV 113 6789************************************************9877765 PP == domain 2 score: -3.0 bits; conditional E-value: 3.8 HHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCC CS RrnaAD 205 kyesvvrkllnrkrktlstslksllpggelqalsstgindnalvkk 250 +++ ++++ + +l++slk ++ + +++i+d v k tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE 235 EWRDTTSIWAAATPEELEESLKDWRKK-IEDGTAQQFIDDAESVRK 279 677778888888888888888844443.335554546666655544 PP >> tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.6 0.0 1.6e-05 0.03 28 90 .. 40 102 .. 27 161 .. 0.89 Alignments for each domain: == domain 1 score: 14.6 bits; conditional E-value: 1.6e-05 GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHH CS RrnaAD 28 leekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfet 90 + ++ +++ig G+G+ + L + + + +E + +++ kk + +++k+++ +l+ + tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE 40 PLKEASIVDIGCGTGNYAVGLSPFVGNITGIEYNKGMMEQAIKKTEHLPNVKIMEGSALNIPL 102 457899************************************************998887655 PP >> tr|A0A1X7V834|A0A1X7V834_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.2 0.0 2.1e-05 0.04 14 82 .. 93 167 .. 88 176 .. 0.82 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 2.1e-05 --HHHHHHHHHHH-GG..TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE- CS RrnaAD 14 knkkvineIldklnle..ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvh 82 +n + + Il+++ ++tvl+ig+G Gil+ + +v + El ++++l q+ +s + +++v+h tr|A0A1X7V834|A0A1X7V834_AMPQE 93 RNSNYFKAILSTVRSMesSSTTVLDIGAGSGILSLMAVRAGaVKVFACELSDVMCELCQDVISandMSDQIEVIH 167 577777778877766555789*************866444359*****************998877778888887 PP >> tr|A0A1X7U4M3|A0A1X7U4M3_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.6 0.0 6.6e-05 0.12 24 80 .. 21 79 .. 15 119 .. 0.75 2 ? -0.1 0.0 0.48 9.2e+02 196 233 .. 85 123 .. 79 131 .. 0.76 Alignments for each domain: == domain 1 score: 12.6 bits; conditional E-value: 6.6e-05 HHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTTTCCCEEE CS RrnaAD 24 dklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkklskdeklkv 80 d l ++ + vl+ig G+G l+++L +r+ vv + de+ +k+ ++ + ++l+ tr|A0A1X7U4M3|A0A1X7U4M3_AMPQE 21 DILSPQSTAVVLDIGCGTGRLSKILSDRLvdGRVVGVDPDEERIKIAMDEGKGRTNLQF 79 5566778999******************9887888888888777777666666666665 PP == domain 2 score: -0.1 bits; conditional E-value: 0.48 S-S.--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHH CS RrnaAD 196 edl.pqkdlkkyesvvrkllnrkrktlstslksllpgge 233 + + ++++ +++ vv +++ kr t +++ +l pgg+ tr|A0A1X7U4M3|A0A1X7U4M3_AMPQE 85 QTFpEDQYDIVFSNVVIHWIKDKRETFKKVYANLKPGGK 123 555444555589999*********999999888877765 PP >> tr|A0A1X7VN51|A0A1X7VN51_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.6 0.0 3.3e-05 0.062 94 143 .. 46 95 .. 16 101 .. 0.81 Alignments for each domain: == domain 1 score: 13.6 bits; conditional E-value: 3.3e-05 HCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHH CS RrnaAD 94 vtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefar 143 t+ + + +l+++nlPy +s++ +++ + + +++++ l+++++ a+ tr|A0A1X7VN51|A0A1X7VN51_AMPQE 46 DTVDKKRSRYILFIGNLPYSVSSDDIMHHFRKRGVPIQQVRLLTERGSAK 95 33467778889************999999998888899999999988776 PP >> tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.1 0.0 4.7e-05 0.088 25 93 .. 52 129 .. 37 154 .. 0.83 Alignments for each domain: == domain 1 score: 13.1 bits; conditional E-value: 4.7e-05 HH-GG....TTSEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTT....TCCCEEEE-S-CCGHHHHHH CS RrnaAD 25 klnle....ekltvleigpGkGilTeeL.akrakqvvvlElderLakllqkkls....kdeklkvvhqDflkfetpee 93 +l+l e tv+++g G Gil + a+ v+++ +d++ +kl+q + + ++ +l v++ D+ + +t ++ tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE 52 NLELVeraiEGRTVVDLGCGSGILGLGClLLGAERVTAIDIDPNCVKLTQSNANdlgiSSDQLSVIQYDIKTIDTDQF 129 444447778999************987526667******************99999999***********99999875 PP >> tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 13.3 0.0 4e-05 0.076 23 61 .. 22 63 .. 19 138 .. 0.81 Alignments for each domain: == domain 1 score: 13.3 bits; conditional E-value: 4e-05 HHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S- CS RrnaAD 23 ldklnleekltvleigpGkGilTeeLakra...kqvvvlEld 61 ++++ ++e + vl++g G+G+l + L k++ +v ++ tr|A0A1X7V969|A0A1X7V969_AMPQE 22 IEEISVKEGDHVLDLGCGTGHLAVVLSKIVgeeGKVIAVDPN 63 7788999*********************99765566666544 PP >> tr|A0A1X7UG12|A0A1X7UG12_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.7 0.0 6.4e-05 0.12 17 93 .. 170 250 .. 154 271 .. 0.74 Alignments for each domain: == domain 1 score: 12.7 bits; conditional E-value: 6.4e-05 HHHHHHHHHH-GG.TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHH CS RrnaAD 17 kvineIldklnle.ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvhqDflkfet 90 +++++++ + + +++ v+++g+G Gil++ ++ ++v ++E +++a + qk ++ +++k+ v+ + + ++ tr|A0A1X7UG12|A0A1X7UG12_AMPQE 170 STYQSAMLQNSIDfKDKVVVDVGAGSGILSVFAVQAGaRKVYAIEA-SSMAVHCQKLIKsnkLASKIIVIAGKVEEIDL 247 445555555555589999************97755546*******8.67888888877766677888888877777777 PP HHH CS RrnaAD 91 pee 93 pe tr|A0A1X7UG12|A0A1X7UG12_AMPQE 248 PET 250 775 PP >> tr|A0A1X7U4E3|A0A1X7U4E3_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.0 0.0 0.0001 0.19 23 78 .. 24 81 .. 11 122 .. 0.79 Alignments for each domain: == domain 1 score: 12.0 bits; conditional E-value: 0.0001 HHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTTTCCCE CS RrnaAD 23 ldklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkklskdekl 78 ld l ++ + vl+ig G+G l+++L +r+ vv + de+ +k+ ++ + ++l tr|A0A1X7U4E3|A0A1X7U4E3_AMPQE 24 LDILSPQSNGVVLDIGCGTGRLSKILSDRLvdGRVVGVDPDEERIKIAMDEGKGRTNL 81 45556668889******************98777887777777666666655555555 PP >> tr|A0A1X7UAH5|A0A1X7UAH5_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.00017 0.31 30 93 .. 109 176 .. 77 206 .. 0.84 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.00017 TTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHH CS RrnaAD 30 ekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpee 93 +++ vl++g+G+Gil+ a + k+v ++E +++a ++++s + ++v++ ++ + ++p tr|A0A1X7UAH5|A0A1X7UAH5_AMPQE 109 QDKVVLDVGSGTGILSLFCARYGkpKKVYAVEA-SDIAVYSRETVSkngYEDVIEVIQGNINDISLPHH 176 6789*************99999999*******7.67888888888877667789999999999998874 PP >> tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 10.5 0.0 0.0003 0.56 22 76 .. 21 78 .. 18 92 .. 0.84 Alignments for each domain: == domain 1 score: 10.5 bits; conditional E-value: 0.0003 HHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTTTCC CS RrnaAD 22 IldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkklskde 76 l+++nl+e + +l++g G+G+ + a r+ vv++ d++ +++ +++l +++ tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE 21 LLNQMNLKEGDVLLDLGCGTGFHARDAAGRVgetGRVVAVDPDKSRIEVAKNALDSNS 78 589*********************9999999888889999999998888888777444 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (265 nodes) Target sequences: 43435 (14716620 residues searched) Passed MSV filter: 1359 (0.0312881); expected 868.7 (0.02) Passed bias filter: 760 (0.0174974); expected 868.7 (0.02) Passed Vit filter: 83 (0.0019109); expected 43.4 (0.001) Passed Fwd filter: 23 (0.000529527); expected 0.4 (1e-05) Initial search space (Z): 43435 [actual number of targets] Domain search space (domZ): 23 [number of targets reported over threshold] # CPU time: 0.33u 0.01s 00:00:00.34 Elapsed: 00:00:00.11 # Mc/sec: 35453.68 // [ok]