# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/RrnaAD.hmm.txt
# target sequence database: proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: RrnaAD [M=265]
Accession: PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-61 208.5 0.1 2.9e-61 208.1 0.1 1.1 1 tr|A0A1X7URS4|A0A1X7URS4_AMPQE rRNA adenine N(6)-methyltransfer
5.2e-35 122.1 0.0 5.8e-35 121.9 0.0 1.0 1 tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE rRNA adenine N(6)-methyltransfer
1.3e-05 25.7 0.0 0.13 12.6 0.0 2.3 2 tr|A0A1X7V1B6|A0A1X7V1B6_AMPQE Uncharacterized protein OS=Amphi
0.00096 19.6 0.0 0.0012 19.2 0.0 1.2 1 tr|A0A1X7TED2|A0A1X7TED2_AMPQE Uncharacterized protein OS=Amphi
0.001 19.5 0.2 0.0031 17.9 0.0 1.8 2 tr|A0A1X7VIN6|A0A1X7VIN6_AMPQE 2-methoxy-6-polyprenyl-1,4-benzo
0.001 19.4 0.0 0.0022 18.4 0.0 1.6 1 tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphi
0.0015 18.9 0.0 0.0018 18.7 0.0 1.1 1 tr|A0A1X7SXW7|A0A1X7SXW7_AMPQE Uncharacterized protein OS=Amphi
0.002 18.5 0.0 0.0029 18.0 0.0 1.3 1 tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE Uncharacterized protein OS=Amphi
0.0029 18.0 0.0 0.012 16.0 0.0 1.8 2 tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE Uncharacterized protein OS=Amphi
0.006 16.9 0.0 0.01 16.2 0.0 1.3 1 tr|A0A1X7UT69|A0A1X7UT69_AMPQE Uncharacterized protein OS=Amphi
0.0075 16.6 0.0 0.0098 16.2 0.0 1.2 1 tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE Uncharacterized protein OS=Amphi
------ inclusion threshold ------
0.016 15.5 0.0 0.018 15.4 0.0 1.0 1 tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE Uncharacterized protein OS=Amphi
0.019 15.3 0.0 0.034 14.5 0.0 1.5 2 tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE Uncharacterized protein OS=Amphi
0.021 15.1 0.0 0.03 14.6 0.0 1.3 1 tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE Uncharacterized protein OS=Amphi
0.023 15.0 0.0 0.04 14.2 0.0 1.3 1 tr|A0A1X7V834|A0A1X7V834_AMPQE Uncharacterized protein OS=Amphi
0.036 14.4 0.0 0.12 12.6 0.0 1.7 2 tr|A0A1X7U4M3|A0A1X7U4M3_AMPQE Uncharacterized protein OS=Amphi
0.047 14.0 0.0 0.062 13.6 0.0 1.2 1 tr|A0A1X7VN51|A0A1X7VN51_AMPQE Uncharacterized protein OS=Amphi
0.049 14.0 0.0 0.088 13.1 0.0 1.4 1 tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE Uncharacterized protein OS=Amphi
0.057 13.7 0.0 0.076 13.3 0.0 1.3 1 tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphi
0.068 13.5 0.0 0.12 12.7 0.0 1.3 1 tr|A0A1X7UG12|A0A1X7UG12_AMPQE Uncharacterized protein OS=Amphi
0.16 12.3 0.0 0.19 12.0 0.0 1.2 1 tr|A0A1X7U4E3|A0A1X7U4E3_AMPQE Uncharacterized protein OS=Amphi
0.23 11.7 0.0 0.31 11.3 0.0 1.3 1 tr|A0A1X7UAH5|A0A1X7UAH5_AMPQE Uncharacterized protein OS=Amphi
0.26 11.6 0.0 0.56 10.5 0.0 1.4 1 tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE Uncharacterized protein OS=Amphi
Domain annotation for each sequence (and alignments):
>> tr|A0A1X7URS4|A0A1X7URS4_AMPQE rRNA adenine N(6)-methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 208.1 0.1 1.5e-64 2.9e-61 7 232 .. 27 243 .. 23 268 .. 0.93
Alignments for each domain:
== domain 1 score: 208.1 bits; conditional E-value: 1.5e-64
GCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE- CS
RrnaAD 7 sygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvh 82
gq++lkn+ +i +I++k+ l++++tvle+gpG+G++T++L++ ak+v + E d+rL+++lqk+++ +++kl+v+
tr|A0A1X7URS4|A0A1X7URS4_AMPQE 27 GKGQHILKNPLIISSIVEKAGLNPSDTVLEVGPGTGNMTVKLLDAAKKVIACEVDTRLVAELQKRVQgtpQASKLQVLV 105
569*****************************************************************999******** PP
S-CCGHHHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHH CS
RrnaAD 83 qDflkfetpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlr 161
D+l ++p + +vanlPy+is+++v++ll ++r+ ++ ++l++q+efa+rl+a+p++k+++rlsv++
tr|A0A1X7URS4|A0A1X7URS4_AMPQE 106 GDVLSRDLPFFS----------VCVANLPYQISSPFVFKLL-LHRPLFRCAVLMFQQEFAQRLVAKPSDKLYCRLSVNV 173
********9955..........7******************.899999******************************* PP
HHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCH CS
RrnaAD 162 eaftdvklvakveksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpgg 232
++++ v++++kv+k++f+Ppp+v+s++v++e+ +++ p ++++++ ++++++ rk+++ls+ +k++ +
tr|A0A1X7URS4|A0A1X7URS4_AMPQE 174 QLLARVTHLMKVGKNNFKPPPQVESSVVRIEPFNPP-PPINYQEWDGLIQIAFQRKNRSLSATFKNKKVLE 243
***********************************8.89************************99654444 PP
>> tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE rRNA adenine N(6)-methyltransferase OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.9 0.0 3.1e-38 5.8e-35 3 184 .. 23 218 .. 21 219 .] 0.94
Alignments for each domain:
== domain 1 score: 121.9 bits; conditional E-value: 3.1e-38
CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT..TCCCE CS
RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls..kdekl 78
+++++++qnfl + ++ n+I++ +++ ++ v e+g+G+G+ T+++++ +v ++E+d+r++ +l+ ls +++l
tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE 23 SAQQKLSQNFLLDLNLTNKIVRYADIAQSSCVCEVGSGPGAITRSILNATnAKVLAIEKDRRFLPSLEL-LSdaTNGRL 100
56889*****************************************999989**************998.555899*** PP
EEE-S-CCGHHHHHHHCT.....TTCCCCEEEEEEE--TTTHHHHHHHHHH.......GGGGCEEEEEEEEEHHHHHHH CS
RrnaAD 79 kvvhqDflkfetpeevte.....kdsihqeflvvanlPyeistqlvkqlle.......esrfglvkmllwlqkefarrl 145
+v h D+l+f+ p + + +++nlP +s +l ++l + g+ +m+l +qke+a+r+
tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE 101 QVCHGDILDFDWPGSCDNivtpkPWDSTGDLSIIGNLPFSVSIPLLLKWLRyltiregPFKYGRTTMTLTFQKEVAERI 179
**************8888999986677789************************99775556789************** PP
H--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SS CS
RrnaAD 146 larpgskkrsrlsvlreaftdvklvakveksifsPppkv 184
+a+pg +rsrls++++ ++ +k+ +++ +s f P pkv
tr|A0A1X7TQG9|A0A1X7TQG9_AMPQE 180 TAPPGHTQRSRLSIMVQSLCTAKQCLTLHSSTFVPRPKV 218
**************************************9 PP
>> tr|A0A1X7V1B6|A0A1X7V1B6_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.6 0.0 6.6e-05 0.13 30 91 .. 75 137 .. 45 165 .. 0.80
2 ! 10.7 0.0 0.00026 0.48 20 59 .. 296 336 .. 293 360 .. 0.89
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 6.6e-05
TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGHHHH CS
RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls.kdeklkvvhqDflkfetp 91
+ vle+g G G + eLakrak v + l e+++k+ ++k ++++l D+ + + p
tr|A0A1X7V1B6|A0A1X7V1B6_AMPQE 75 AGMDVLELGGGSGRYSGELAKRAKTVISTDLIESFLKENEEKNGpSHPNLSFRVLDAAQLDYP 137
5689*********************************99997667777777666666666555 PP
== domain 2 score: 10.7 bits; conditional E-value: 0.00026
HHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE- CS
RrnaAD 20 neIldklnleekltvleigpGkGilTeeLakra.kqvvvlE 59
+e l+klnl+ + vl++g G G l L k + v lE
tr|A0A1X7V1B6|A0A1X7V1B6_AMPQE 296 KELLSKLNLTSDSVVLDVGCGLGGLASYLIKECdVDCVGLE 336
6789*************************999965666666 PP
>> tr|A0A1X7TED2|A0A1X7TED2_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.2 0.0 6.3e-07 0.0012 18 94 .. 45 130 .. 36 193 .. 0.86
Alignments for each domain:
== domain 1 score: 19.2 bits; conditional E-value: 6.3e-07
HHHHHHHHH-GG....TTSEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTT....TCCCEEEE-S-CCG CS
RrnaAD 18 vineIldklnle....ekltvleigpGkGilTeeL.akrakqvvvlElderLakllqkkls....kdeklkvvhqDflk 87
++ e l l+l e tv+++g G Gil + a+ v+++ +d++ +kl+q + + ++ +l v+++D+ +
tr|A0A1X7TED2|A0A1X7TED2_AMPQE 45 LASELLISLELAeraiEGRTVIDLGCGSGILGLGClLLGAERVTAIDIDPNCVKLTQSNANdlgiSSDQLSVIQCDIKT 123
5556666677777888999************987526667******************999999*9************* PP
HHHHHHH CS
RrnaAD 88 fetpeev 94
+t ++
tr|A0A1X7TED2|A0A1X7TED2_AMPQE 124 IDTDKFD 130
*999855 PP
>> tr|A0A1X7VIN6|A0A1X7VIN6_AMPQE 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Amphimedon queensl
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.8 0.1 6.5 1.2e+04 213 247 .. 11 48 .. 7 55 .. 0.54
2 ! 17.9 0.0 1.7e-06 0.0031 53 109 .. 126 182 .. 80 193 .. 0.72
Alignments for each domain:
== domain 1 score: -3.8 bits; conditional E-value: 6.5
HHCTTTSBCCCHCCCTSTCHHHHHCTT....T--TTTC CS
RrnaAD 213 llnrkrktlstslksllpggelqalsst...gindnal 247
lln + ++ ++ +++++++++s ++ ++++
tr|A0A1X7VIN6|A0A1X7VIN6_AMPQE 11 LLNNAASVINRAFTAGANNSNTEKMTSFgfqQVSEKTK 48
55666666666666666666666665543334444444 PP
== domain 2 score: 17.9 bits; conditional E-value: 1.7e-06
SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCCCCEEEEEEE CS
RrnaAD 53 kqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevtekdsihqeflvvan 109
qv+v+ + ++++ + +k+++++e++k+vh D+l +p++ + i ++ v+n
tr|A0A1X7VIN6|A0A1X7VIN6_AMPQE 126 LQVTVVDINKEMLTEGEKRFKNNENIKWVHGDALSLPFPSNHFDAYTIAFGIRNVSN 182
389*************************************98887777766666666 PP
>> tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.4 0.0 1.1e-06 0.0022 23 70 .. 24 74 .. 22 189 .. 0.58
Alignments for each domain:
== domain 1 score: 18.4 bits; conditional E-value: 1.1e-06
HHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHC CS
RrnaAD 23 ldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqk 70
+++l ++ek++vl++g G+G lT+ La+r+ vv + de+ +k+ +
tr|A0A1X7VEF1|A0A1X7VEF1_AMPQE 24 IEELSPQEKDKVLDLGCGTGRLTQVLAERVgpeGLVVGIDPDEERIKVAIE 74
6788999**********************9875555666666655555444 PP
>> tr|A0A1X7SXW7|A0A1X7SXW7_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.7 0.0 9.5e-07 0.0018 179 259 .. 12 96 .. 8 102 .. 0.80
Alignments for each domain:
== domain 1 score: 18.7 bits; conditional E-value: 9.5e-07
CS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.....T--TTTCCCCSGH CS
RrnaAD 179 sPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqalsst....gindnalvkklsa 253
P+ +v ++v++++ +++ + d + +e vvr+l+ +rk ++ s k l+p + + ++ g+++ ++++l+
tr|A0A1X7SXW7|A0A1X7SXW7_AMPQE 12 NPENQVQAVVVKITPLLTPVINTDFDTLETVVRALFQYRRKMIRHSAKLLFPDEYSHLSTELflrsGVDQTLRAQQLTL 90
58999*************9999************************999998776444433222237777777777777 PP
HHHHHH CS
RrnaAD 254 eqtldi 259
e++ ++
tr|A0A1X7SXW7|A0A1X7SXW7_AMPQE 91 EDFKSL 96
777665 PP
>> tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.0 0.0 1.5e-06 0.0029 22 59 .. 35 74 .. 33 124 .. 0.85
Alignments for each domain:
== domain 1 score: 18.0 bits; conditional E-value: 1.5e-06
HHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE- CS
RrnaAD 22 IldklnleekltvleigpGkGilTeeLakra..kqvvvlE 59
l+kl ++e++ vl++g G+G lT ++akr+ +v +
tr|A0A1X7V2C8|A0A1X7V2C8_AMPQE 35 LLKKLPIQETDVVLDLGCGTGRLTSNIAKRVinGKVIGID 74
5899**************************9544444444 PP
>> tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.0 0.0 6.3e-06 0.012 30 87 .. 42 99 .. 27 120 .. 0.90
2 ? -0.8 0.0 0.83 1.6e+03 205 261 .. 222 276 .. 206 278 .. 0.74
Alignments for each domain:
== domain 1 score: 16.0 bits; conditional E-value: 6.3e-06
TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCG CS
RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflk 87
++ +++ig G+G+ + L + + + +E + +++ +kk + +++k+++ +l
tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE 42 KEASIVDIGCGTGNYAVALSPFVGNITGIEYNKGMMEQATKKTEHLPNVKIMEGSALS 99
5778***********************************************9987765 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.83
HHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCCSGHHHHHHHHH CS
RrnaAD 205 kyesvvrkllnrkrktlstslksllpggelqalsstgindnalvkklsaeqtldifk 261
+++ ++++ + +l++slk + + + +++i+d +v ++++qt +i+
tr|A0A1X7UNT6|A0A1X7UNT6_AMPQE 222 EWRNTTSIWAAATPEELEESLKDWRK-KIEDGTAQQFIDDVETV-RKRIGQTTTIVA 276
79999999999999999999995544.44455555566665555.567888877765 PP
>> tr|A0A1X7UT69|A0A1X7UT69_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.2 0.0 5.5e-06 0.01 30 82 .. 38 88 .. 28 97 .. 0.86
Alignments for each domain:
== domain 1 score: 16.2 bits; conditional E-value: 5.5e-06
TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE- CS
RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvh 82
+ tvl+ig G+G+ +eL ++k+ +E ++++++ ++ + e+ k ++
tr|A0A1X7UT69|A0A1X7UT69_AMPQE 38 KRATVLDIGCGTGNYAKELSPYIKEIIGIEVNSKMIEEANN--KGIENFKTYE 88
6789*********************************9998..4445555555 PP
>> tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.2 0.0 5.2e-06 0.0098 21 77 .. 20 79 .. 5 122 .. 0.87
Alignments for each domain:
== domain 1 score: 16.2 bits; conditional E-value: 5.2e-06
HHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTTTCCC CS
RrnaAD 21 eIldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkklskdek 77
+ l+++n++e + +l++g G+G+ + +a+r+ vv++ d++ +++ +++l ++++
tr|A0A1X7VHW0|A0A1X7VHW0_AMPQE 20 KLLNQMNPKEGDVLLDLGCGTGFHARDVAERVgetGRVVAVDPDRSRIEVAKNALDSNPP 79
6799****************************99889*******9999999998885543 PP
>> tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 15.4 0.0 9.4e-06 0.018 18 74 .. 11 71 .. 6 81 .. 0.74
Alignments for each domain:
== domain 1 score: 15.4 bits; conditional E-value: 9.4e-06
HHHHHHHHH-GG.TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...T CS
RrnaAD 18 vineIldklnle.ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...k 74
++++++ + + +++ v+++g+G Gil++ ++ ++v ++E +++a + qk ++ +
tr|A0A1X7SQ64|A0A1X7SQ64_AMPQE 11 TYQSAMLQNSIDfKDKVVVDVGAGSGILSVFAVQAGaRKVYAIEA-SSMAVHCQKLIKsnkL 71
566666666677788999***********97655545*******8.6788888886664333 PP
>> tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.5 0.0 1.8e-05 0.034 30 88 .. 55 113 .. 20 175 .. 0.89
2 ? -3.0 0.0 3.8 7.2e+03 205 250 .. 235 279 .. 234 290 .. 0.60
Alignments for each domain:
== domain 1 score: 14.5 bits; conditional E-value: 1.8e-05
TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGH CS
RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkf 88
++ +++ig G+G+ + L + +v+ +E + + + kk + +++k+++ +l
tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE 55 KEASIVDIGCGTGNYAVALSPFVGNVTGIEYNKGMREQAIKKTEHLPNVKIMEGSALSV 113
6789************************************************9877765 PP
== domain 2 score: -3.0 bits; conditional E-value: 3.8
HHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCC CS
RrnaAD 205 kyesvvrkllnrkrktlstslksllpggelqalsstgindnalvkk 250
+++ ++++ + +l++slk ++ + +++i+d v k
tr|A0A1X7UJ04|A0A1X7UJ04_AMPQE 235 EWRDTTSIWAAATPEELEESLKDWRKK-IEDGTAQQFIDDAESVRK 279
677778888888888888888844443.335554546666655544 PP
>> tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.6 0.0 1.6e-05 0.03 28 90 .. 40 102 .. 27 161 .. 0.89
Alignments for each domain:
== domain 1 score: 14.6 bits; conditional E-value: 1.6e-05
GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHH CS
RrnaAD 28 leekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfet 90
+ ++ +++ig G+G+ + L + + + +E + +++ kk + +++k+++ +l+ +
tr|A0A1X7UPH9|A0A1X7UPH9_AMPQE 40 PLKEASIVDIGCGTGNYAVGLSPFVGNITGIEYNKGMMEQAIKKTEHLPNVKIMEGSALNIPL 102
457899************************************************998887655 PP
>> tr|A0A1X7V834|A0A1X7V834_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.2 0.0 2.1e-05 0.04 14 82 .. 93 167 .. 88 176 .. 0.82
Alignments for each domain:
== domain 1 score: 14.2 bits; conditional E-value: 2.1e-05
--HHHHHHHHHHH-GG..TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE- CS
RrnaAD 14 knkkvineIldklnle..ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvh 82
+n + + Il+++ ++tvl+ig+G Gil+ + +v + El ++++l q+ +s + +++v+h
tr|A0A1X7V834|A0A1X7V834_AMPQE 93 RNSNYFKAILSTVRSMesSSTTVLDIGAGSGILSLMAVRAGaVKVFACELSDVMCELCQDVISandMSDQIEVIH 167
577777778877766555789*************866444359*****************998877778888887 PP
>> tr|A0A1X7U4M3|A0A1X7U4M3_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.6 0.0 6.6e-05 0.12 24 80 .. 21 79 .. 15 119 .. 0.75
2 ? -0.1 0.0 0.48 9.2e+02 196 233 .. 85 123 .. 79 131 .. 0.76
Alignments for each domain:
== domain 1 score: 12.6 bits; conditional E-value: 6.6e-05
HHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTTTCCCEEE CS
RrnaAD 24 dklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkklskdeklkv 80
d l ++ + vl+ig G+G l+++L +r+ vv + de+ +k+ ++ + ++l+
tr|A0A1X7U4M3|A0A1X7U4M3_AMPQE 21 DILSPQSTAVVLDIGCGTGRLSKILSDRLvdGRVVGVDPDEERIKIAMDEGKGRTNLQF 79
5566778999******************9887888888888777777666666666665 PP
== domain 2 score: -0.1 bits; conditional E-value: 0.48
S-S.--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHH CS
RrnaAD 196 edl.pqkdlkkyesvvrkllnrkrktlstslksllpgge 233
+ + ++++ +++ vv +++ kr t +++ +l pgg+
tr|A0A1X7U4M3|A0A1X7U4M3_AMPQE 85 QTFpEDQYDIVFSNVVIHWIKDKRETFKKVYANLKPGGK 123
555444555589999*********999999888877765 PP
>> tr|A0A1X7VN51|A0A1X7VN51_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.6 0.0 3.3e-05 0.062 94 143 .. 46 95 .. 16 101 .. 0.81
Alignments for each domain:
== domain 1 score: 13.6 bits; conditional E-value: 3.3e-05
HCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHH CS
RrnaAD 94 vtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefar 143
t+ + + +l+++nlPy +s++ +++ + + +++++ l+++++ a+
tr|A0A1X7VN51|A0A1X7VN51_AMPQE 46 DTVDKKRSRYILFIGNLPYSVSSDDIMHHFRKRGVPIQQVRLLTERGSAK 95
33467778889************999999998888899999999988776 PP
>> tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.1 0.0 4.7e-05 0.088 25 93 .. 52 129 .. 37 154 .. 0.83
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 4.7e-05
HH-GG....TTSEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTT....TCCCEEEE-S-CCGHHHHHH CS
RrnaAD 25 klnle....ekltvleigpGkGilTeeL.akrakqvvvlElderLakllqkkls....kdeklkvvhqDflkfetpee 93
+l+l e tv+++g G Gil + a+ v+++ +d++ +kl+q + + ++ +l v++ D+ + +t ++
tr|A0A1X7U0X0|A0A1X7U0X0_AMPQE 52 NLELVeraiEGRTVVDLGCGSGILGLGClLLGAERVTAIDIDPNCVKLTQSNANdlgiSSDQLSVIQYDIKTIDTDQF 129
444447778999************987526667******************99999999***********99999875 PP
>> tr|A0A1X7V969|A0A1X7V969_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.3 0.0 4e-05 0.076 23 61 .. 22 63 .. 19 138 .. 0.81
Alignments for each domain:
== domain 1 score: 13.3 bits; conditional E-value: 4e-05
HHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S- CS
RrnaAD 23 ldklnleekltvleigpGkGilTeeLakra...kqvvvlEld 61
++++ ++e + vl++g G+G+l + L k++ +v ++
tr|A0A1X7V969|A0A1X7V969_AMPQE 22 IEEISVKEGDHVLDLGCGTGHLAVVLSKIVgeeGKVIAVDPN 63
7788999*********************99765566666544 PP
>> tr|A0A1X7UG12|A0A1X7UG12_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.7 0.0 6.4e-05 0.12 17 93 .. 170 250 .. 154 271 .. 0.74
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 6.4e-05
HHHHHHHHHH-GG.TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHH CS
RrnaAD 17 kvineIldklnle.ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvhqDflkfet 90
+++++++ + + +++ v+++g+G Gil++ ++ ++v ++E +++a + qk ++ +++k+ v+ + + ++
tr|A0A1X7UG12|A0A1X7UG12_AMPQE 170 STYQSAMLQNSIDfKDKVVVDVGAGSGILSVFAVQAGaRKVYAIEA-SSMAVHCQKLIKsnkLASKIIVIAGKVEEIDL 247
445555555555589999************97755546*******8.67888888877766677888888877777777 PP
HHH CS
RrnaAD 91 pee 93
pe
tr|A0A1X7UG12|A0A1X7UG12_AMPQE 248 PET 250
775 PP
>> tr|A0A1X7U4E3|A0A1X7U4E3_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.0 0.0001 0.19 23 78 .. 24 81 .. 11 122 .. 0.79
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 0.0001
HHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTTTCCCE CS
RrnaAD 23 ldklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkklskdekl 78
ld l ++ + vl+ig G+G l+++L +r+ vv + de+ +k+ ++ + ++l
tr|A0A1X7U4E3|A0A1X7U4E3_AMPQE 24 LDILSPQSNGVVLDIGCGTGRLSKILSDRLvdGRVVGVDPDEERIKIAMDEGKGRTNL 81
45556668889******************98777887777777666666655555555 PP
>> tr|A0A1X7UAH5|A0A1X7UAH5_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 0.00017 0.31 30 93 .. 109 176 .. 77 206 .. 0.84
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00017
TTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHH CS
RrnaAD 30 ekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpee 93
+++ vl++g+G+Gil+ a + k+v ++E +++a ++++s + ++v++ ++ + ++p
tr|A0A1X7UAH5|A0A1X7UAH5_AMPQE 109 QDKVVLDVGSGTGILSLFCARYGkpKKVYAVEA-SDIAVYSRETVSkngYEDVIEVIQGNINDISLPHH 176
6789*************99999999*******7.67888888888877667789999999999998874 PP
>> tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.0 0.0003 0.56 22 76 .. 21 78 .. 18 92 .. 0.84
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.0003
HHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTTTCC CS
RrnaAD 22 IldklnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkklskde 76
l+++nl+e + +l++g G+G+ + a r+ vv++ d++ +++ +++l +++
tr|A0A1X7VJI0|A0A1X7VJI0_AMPQE 21 LLNQMNLKEGDVLLDLGCGTGFHARDAAGRVgetGRVVAVDPDKSRIEVAKNALDSNS 78
589*********************9999999888889999999998888888777444 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 43435 (14716620 residues searched)
Passed MSV filter: 1359 (0.0312881); expected 868.7 (0.02)
Passed bias filter: 760 (0.0174974); expected 868.7 (0.02)
Passed Vit filter: 83 (0.0019109); expected 43.4 (0.001)
Passed Fwd filter: 23 (0.000529527); expected 0.4 (1e-05)
Initial search space (Z): 43435 [actual number of targets]
Domain search space (domZ): 23 [number of targets reported over threshold]
# CPU time: 0.33u 0.01s 00:00:00.34 Elapsed: 00:00:00.11
# Mc/sec: 35453.68
//
[ok]