# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/RrnaAD.hmm.txt
# target sequence database: proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: RrnaAD [M=265]
Accession: PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.6e-65 218.9 0.0 1.3e-64 218.5 0.0 1.1 1 tr|C3YM50|C3YM50_BRAFL rRNA adenine N(6)-methyltransferase O
2.8e-34 119.0 0.0 4.5e-34 118.4 0.0 1.2 1 tr|C3YHA0|C3YHA0_BRAFL Uncharacterized protein OS=Branchiost
1.4e-15 57.8 0.0 3.6e-15 56.4 0.0 1.7 1 tr|C3XZM5|C3XZM5_BRAFL rRNA adenine N(6)-methyltransferase O
4e-11 43.1 0.0 5.1e-07 29.7 0.0 2.4 2 tr|C3ZB63|C3ZB63_BRAFL Uncharacterized protein OS=Branchiost
2.6e-07 30.6 0.0 3.4e-07 30.3 0.0 1.2 1 tr|C3ZB65|C3ZB65_BRAFL Uncharacterized protein OS=Branchiost
1e-05 25.4 0.0 1.4e-05 24.9 0.0 1.2 1 tr|C3ZB51|C3ZB51_BRAFL Uncharacterized protein OS=Branchiost
3.1e-05 23.8 0.0 0.17 11.6 0.0 2.3 2 tr|C3ZKH4|C3ZKH4_BRAFL Uncharacterized protein OS=Branchiost
3.8e-05 23.5 0.0 5.9e-05 22.9 0.0 1.3 1 tr|C3YVM6|C3YVM6_BRAFL Uncharacterized protein OS=Branchiost
0.00059 19.6 0.0 0.0012 18.6 0.0 1.4 1 tr|C3YVL9|C3YVL9_BRAFL Uncharacterized protein OS=Branchiost
0.00087 19.1 0.0 0.0012 18.7 0.0 1.1 1 tr|C3Y6Y8|C3Y6Y8_BRAFL Uncharacterized protein OS=Branchiost
0.0012 18.6 0.0 0.0019 18.0 0.0 1.2 1 tr|C3YXC3|C3YXC3_BRAFL Ubiquinone biosynthesis O-methyltrans
0.0023 17.7 0.0 0.0077 16.0 0.0 1.8 2 tr|C3Y6Z7|C3Y6Z7_BRAFL Uncharacterized protein OS=Branchiost
0.0027 17.5 0.0 0.0058 16.4 0.0 1.5 2 tr|C3ZHD7|C3ZHD7_BRAFL Uncharacterized protein OS=Branchiost
------ inclusion threshold ------
0.019 14.7 0.0 0.036 13.8 0.0 1.4 1 tr|C3YV83|C3YV83_BRAFL Uncharacterized protein OS=Branchiost
0.02 14.7 0.0 0.029 14.1 0.0 1.2 1 tr|C3YPV1|C3YPV1_BRAFL Uncharacterized protein (Fragment) OS
0.054 13.2 0.0 0.11 12.1 0.0 1.5 1 tr|C3ZV20|C3ZV20_BRAFL Uncharacterized protein OS=Branchiost
0.093 12.4 0.0 0.34 10.6 0.0 1.8 2 tr|C3YQN5|C3YQN5_BRAFL Uncharacterized protein OS=Branchiost
0.12 12.1 0.0 0.2 11.3 0.0 1.3 1 tr|C3XW86|C3XW86_BRAFL Uncharacterized protein OS=Branchiost
0.12 12.1 0.0 0.21 11.3 0.0 1.3 1 tr|C3XPE3|C3XPE3_BRAFL Uncharacterized protein OS=Branchiost
0.16 11.7 0.0 0.33 10.7 0.0 1.4 1 tr|C3XVW9|C3XVW9_BRAFL Uncharacterized protein OS=Branchiost
0.16 11.7 0.0 0.21 11.3 0.0 1.2 1 tr|C3ZSK0|C3ZSK0_BRAFL Uncharacterized protein OS=Branchiost
0.23 11.2 0.0 10 5.7 0.0 2.1 2 tr|C3ZJJ0|C3ZJJ0_BRAFL Uncharacterized protein OS=Branchiost
0.29 10.8 0.0 0.53 10.0 0.0 1.4 1 tr|C3ZBH4|C3ZBH4_BRAFL Uncharacterized protein OS=Branchiost
Domain annotation for each sequence (and alignments):
>> tr|C3YM50|C3YM50_BRAFL rRNA adenine N(6)-methyltransferase OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_225323 PE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 218.5 0.0 1e-67 1.3e-64 4 228 .. 23 238 .. 21 266 .. 0.95
Alignments for each domain:
== domain 1 score: 218.5 bits; conditional E-value: 1e-67
CXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCG CS
RrnaAD 4 lrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflk 87
++k++gq++lkn+ v+++ ++k+ l++++tvleigpG+G+lT ++ +r+k+v + E+d+rL+++lqk+++ +++kl+++ D+lk
tr|C3YM50|C3YM50_BRAFL 23 FNKQFGQHILKNPLVVDSMVEKAALRPTDTVLEIGPGTGNLTMKMIDRVKKVIACEIDPRLVAELQKRVQgtpSAHKLQMMVGDALK 109
799************************************************************************************ PP
HHHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC- CS
RrnaAD 88 fetpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakve 174
+++p + ++van+Py+is++lv++ll ++r+ ++ ++l++q+efa+rl+a+pg+k+++rls+++++++ v +++k++
tr|C3YM50|C3YM50_BRAFL 110 TDLPFFD----------ICVANIPYQISSPLVFKLL-LHRPFFRCAILMFQREFAQRLVAPPGDKLYCRLSLNVQLLARVDHLMKIG 185
*****77..........7******************.788889******************************************** PP
GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCT CS
RrnaAD 175 ksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksl 228
+++f+Pppkv+s++v+le+k+++ p + ++++ +vr+++ rk+ktl +++k+
tr|C3YM50|C3YM50_BRAFL 186 RNNFRPPPKVESSVVRLEPKNPP-PPINFQEWDGMVRIAFLRKNKTLGAAFKNS 238
**********************8.89***********************98854 PP
>> tr|C3YHA0|C3YHA0_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_125270 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 118.4 0.0 3.6e-37 4.5e-34 3 196 .. 36 243 .. 34 253 .. 0.91
Alignments for each domain:
== domain 1 score: 118.4 bits; conditional E-value: 3.6e-37
CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CC CS
RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls..kdeklkvvhqDfl 86
++ k+++qnfl ++++ ++I++ + e v e+gpG+G T++++k +vvv+Eld+r+ + l+ ls +++++v++D+l
tr|C3YHA0|C3YHA0_BRAFL 36 NAAKQLSQNFLFDTNLTDKIVKSAGNLEGAYVCEVGPGPGGITRSILKAGaAKVVVVELDKRFNAGLRL-LSaaAPGRVEIVNADIL 121
67799*****************************************99988***************999.5557889********** PP
GHHHHHHHCT.....TTCCCCEEEEEEE--TTTHHHHHHHHHH.......GGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHH CS
RrnaAD 87 kfetpeevte.....kdsihqeflvvanlPyeistqlvkqlle.......esrfglvkmllwlqkefarrllarpgskkrsrlsvlr 161
++++ + + + + +++nlP ++st+l+ ++le g+ + +l +qke+ +r++a+p s++rsrls+++
tr|C3YHA0|C3YHA0_BRAFL 122 TYNLAKALPLdlavpWEGDPPNVHIIGNLPFNVSTPLIIRWLEalalrtgPFVYGRTQLTLTFQKEVCERICAPPRSSQRSRLSIMS 208
****99665478888666778899*********************9987755567899***************************** PP
HHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS CS
RrnaAD 162 eaftdvklvakveksifsPppkvdsalvelerkde 196
++++ vk+ ++ ++f P+p vd +v ++ d
tr|C3YHA0|C3YHA0_BRAFL 209 QYLCRVKHCFRIPGKCFVPKPDVDVGVVHFTPLDR 243
****************************9988765 PP
>> tr|C3XZM5|C3XZM5_BRAFL rRNA adenine N(6)-methyltransferase OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_65703 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 56.4 0.0 2.9e-18 3.6e-15 4 263 .. 112 421 .. 109 423 .. 0.81
Alignments for each domain:
== domain 1 score: 56.4 bits; conditional E-value: 2.9e-18
CXXGCG--EE--HHHHHHHHHHH.-GG.TTSEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CC CS
RrnaAD 4 lrksygqnflknkkvineIldkl.nle.ekltvleigpGkGilTeeL.akrakqvvvlElderLakllqkkls.kdeklkvvhqDfl 86
++++ + +++ ++ +++ ++d+l +l+ +k+ + e+ pG+G+ T+eL a a +lE+d++++ + + + v +Df
tr|C3XZM5|C3XZM5_BRAFL 112 FKSRIKNKYILDPALAAVVVDHLgDLSeNKQWIFELNPGPGVVTRELlAAGASRILILENDRVFLPYSMALAKhVRDIVHVKYADFF 198
79999*****************9667777889***************5566699***********9999966655566778889999 PP
GHHHHHHHCT..................TTCCCCEEEEEEE--TTTHH....HHHHHHHH...GGGGCEEEEEEEEEHHHHHHHH-- CS
RrnaAD 87 kfetpeevte..................kdsihqeflvvanlPyeist....qlvkqlle...esrfglvkmllwlqkefarrllar 148
+ + + + + + +vv+ l e+ + l ++le + g+ + l + +++++ ++a+
tr|C3XZM5|C3XZM5_BRAFL 199 RIDPMGDG-VikqpaissvelfnkiqpaHWKEEVVVRVVGMLSQEKEKthlrHLCYRILErssLFEYGRMELNLFITEKVYNMITAP 284
99987743.146999********9996655555667899999995543112245666666966555567888999************ PP
TTST..T-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSE..................EEEEEEE-SS-S--....S-HHHHHHHHH CS
RrnaAD 149 pgsk..krsrlsvlreaftdvklvakveksifsPppkvds..................alvelerkdedlpq....kdlkkyesvvr 211
pg + ++s+l +a +d++l++k ++s f P +v++ lv+l++k+ ++q ++ +++ ++vr
tr|C3XZM5|C3XZM5_BRAFL 285 PGVDlvIYESTSILCQACFDIQLLLKEPNSRFLPV-QVKGqttykhkanadrfvndhmCLVRLTPKAALFDQgltpQNGSQFIFLVR 370
**87336***********************66666.6665566666666677777777*********98855333356789****** PP
HHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCCSGHHHHHHHHHHH CS
RrnaAD 212 kllnrkrktlstslksllpggelqalsstgindnalvkklsaeqtldifkel 263
+l+++ r +l ++ + g l+ ls+ g+ ++++++ls++q++++f +l
tr|C3XZM5|C3XZM5_BRAFL 371 QLMAKPRAKLTDRME-IWVPGSLNILSDLGLRPDMRAGDLSPAQFMKLFLLL 421
*************99.7777777999788******************99876 PP
>> tr|C3ZB63|C3ZB63_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_118790 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.7 0.0 4.1e-10 5.1e-07 30 93 .. 59 122 .. 42 145 .. 0.87
2 ! 10.9 0.0 0.00022 0.27 18 81 .. 283 346 .. 272 382 .. 0.82
Alignments for each domain:
== domain 1 score: 29.7 bits; conditional E-value: 4.1e-10
TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGHHHHHH CS
RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls.kdeklkvvhqDflkfetpee 93
e +t+le+g+G G T++La++ak+v+++ e+++ ++ ++ ++++ +++D+ k e+p +
tr|C3ZB63|C3ZB63_BRAFL 59 EGKTILELGAGIGRYTAPLAQQAKHVTAVDFMESFIRKNEE-VNgHHKNVRFMQADVTKLEMPPK 122
889*********************************99988.6669***************9985 PP
== domain 2 score: 10.9 bits; conditional E-value: 0.00022
HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTTTCCCEEEE CS
RrnaAD 18 vineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkklskdeklkvv 81
+ +e + l+l++++ vl++g G G +ak + v+++ l ++++++ +++ s +e+++ v
tr|C3ZB63|C3ZB63_BRAFL 283 TTEEFVARLDLQPDQHVLDVGCGIGGGDFYMAKKFgAVVTAMDLSTNMIEIATERAS-QENITKV 346
66788999***************************9999***************877.6666644 PP
>> tr|C3ZB65|C3ZB65_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_68467 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.3 0.0 2.8e-10 3.4e-07 29 93 .. 50 117 .. 19 142 .. 0.86
Alignments for each domain:
== domain 1 score: 30.3 bits; conditional E-value: 2.8e-10
G...TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGHHHHHH CS
RrnaAD 29 e...ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls.kdeklkvvhqDflkfetpee 93
e +t+le+g+G G T++La++ak+v+++ e ++ ++ ++ ++++ +++D+ k e+p +
tr|C3ZB65|C3ZB65_BRAFL 50 LpgiEGKTILELGAGIGRYTAPLAQQAKHVTAVDFMEPFIRKNEE-VNgHHKNVRFMQADVTKLEMPPK 117
1445899*********************************99888.6669***************9985 PP
>> tr|C3ZB51|C3ZB51_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_68483 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 24.9 0.0 1.2e-08 1.4e-05 30 95 .. 94 159 .. 77 184 .. 0.88
Alignments for each domain:
== domain 1 score: 24.9 bits; conditional E-value: 1.2e-08
TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHC CS
RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevt 95
+ + vle+g+G G +T +La +a++v+++ e+++k +++ + ++++ +++D+ ++p+e
tr|C3ZB51|C3ZB51_BRAFL 94 KGKRVLELGAGIGRFTPSLARQADHVTAVDFMESFIKKNEEANRHLGNINFLQADVTRLDLPQESV 159
6789*************************************999***************9999654 PP
>> tr|C3ZKH4|C3ZKH4_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_119070 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 11.6 0.0 0.00014 0.17 20 61 .. 55 97 .. 52 151 .. 0.72
2 ! 10.0 0.0 0.00042 0.52 20 59 .. 297 337 .. 291 383 .. 0.80
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 0.00014
HHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S- CS
RrnaAD 20 neIldklnleekltvleigpGkGilTeeLakra.kqvvvlEld 61
+ +++ l+++e vl++g+G G ++ La +v++ El
tr|C3ZKH4|C3ZKH4_BRAFL 55 DAAIKLLDVREGARVLDVGAGIGGASRYLAHKTkCHVTAAELL 97
6789999**********************88884677888864 PP
== domain 2 score: 10.0 bits; conditional E-value: 0.00042
HHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE- CS
RrnaAD 20 neIldklnleekltvleigpGkGilTeeLakra.kqvvvlE 59
+ +++ l+++e vl++g+G G ++ La + +v++ E
tr|C3ZKH4|C3ZKH4_BRAFL 297 DAAMKLLDIREGARVLDVGAGIGGPSRYLAHKSkCHVTASE 337
6788889**********************999945666666 PP
>> tr|C3YVM6|C3YVM6_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_131043 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.9 0.0 4.7e-08 5.9e-05 18 118 .. 50 153 .. 37 169 .. 0.83
Alignments for each domain:
== domain 1 score: 22.9 bits; conditional E-value: 4.7e-08
HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HH..HH.HHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCC CS
RrnaAD 18 vineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElder..La.kllqkklskdeklkvvhqDflkfetpeevtekdsi 100
++e+++ n+ +++ vl++g+G G + La +v++lEl + ++l+k+ +++e++ v D+++ ++ +
tr|C3YVM6|C3YVM6_BRAFL 50 AVDEAIQRFNIGKDTRVLDVGSGIGGPARYLAWKTgCHVTALELQHDhhVTgEVLTKRCNLSERVRHVCGDIMDIDLGHGSY---DL 133
6899***************************65555*******85441143499************************9655...77 PP
CCEEEEEEE--T..TTHHHH CS
RrnaAD 101 hqeflvvanlPy..eistql 118
lv+ ++P ++s+q
tr|C3YVM6|C3YVM6_BRAFL 134 VTSWLVFCHIPDkkKVSEQC 153
88999999999854555554 PP
>> tr|C3YVL9|C3YVL9_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_131039 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.6 0.0 9.6e-07 0.0012 18 117 .. 1490 1592 .. 1478 1606 .. 0.83
Alignments for each domain:
== domain 1 score: 18.6 bits; conditional E-value: 9.6e-07
HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HH..HH.HHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTT CS
RrnaAD 18 vineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElder..La.kllqkklskdeklkvvhqDflkfetpeevtekd 98
++e+++ n+ +++ vl++g+G G + La +v++lEl + ++l+k+ +++e++ v D+++ ++ +
tr|C3YVL9|C3YVL9_BRAFL 1490 AVDEAIQRFNIGKDTRVLDVGSGIGGPARYLAWKTgCHVTALELQHDhhVTgEVLTKRCNLSERVRHVCGDIMDIDLGHGSY--- 1571
5899***************************65555*******85441143499************************9655... PP
CCCCEEEEEEE--T..TTHHH CS
RrnaAD 99 sihqeflvvanlPy..eistq 117
lv+ ++P ++s+q
tr|C3YVL9|C3YVL9_BRAFL 1572 DLVTSWLVFCHIPDkkKVSEQ 1592
778899999999985455555 PP
>> tr|C3Y6Y8|C3Y6Y8_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_91434 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.7 0.0 9.5e-07 0.0012 29 89 .. 31 91 .. 7 104 .. 0.83
Alignments for each domain:
== domain 1 score: 18.7 bits; conditional E-value: 9.5e-07
GTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHH CS
RrnaAD 29 eekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkklskdeklkvvhqDflkfe 89
e + vl++g G+G +T+++a++ k+vv + + ++++ ++++ + d+++ +D+ f+
tr|C3Y6Y8|C3Y6Y8_BRAFL 31 ERGDSVLDVGCGTGRTTQHIAQQGvKSVVGIDQSPDFIRYTKENAE-DTNVSFSVADIQRFS 91
47899***************99888*****************9666.999988888877765 PP
>> tr|C3YXC3|C3YXC3_BRAFL Ubiquinone biosynthesis O-methyltransferase, mitochondrial OS=Branchiostoma floridae OX=7739
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.0 0.0 1.6e-06 0.0019 21 77 .. 117 173 .. 107 183 .. 0.87
Alignments for each domain:
== domain 1 score: 18.0 bits; conditional E-value: 1.6e-06
HHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCC CS
RrnaAD 21 eIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdek 77
+I +k+ + e l +l++g G Gil+++Lak qv+ l e+ +k ++++ d+
tr|C3YXC3|C3YXC3_BRAFL 117 SISKKSRPLEGLRILDVGCGGGILSVPLAKLGAQVTGLDASEEAVKAATAHMARDPS 173
688899999****************************99999999999888876655 PP
>> tr|C3Y6Z7|C3Y6Z7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_91425 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.0 0.0 6.2e-06 0.0077 29 89 .. 31 91 .. 9 101 .. 0.84
2 ? -3.4 0.0 5.1 6.3e+03 95 132 .. 691 727 .. 680 742 .. 0.71
Alignments for each domain:
== domain 1 score: 16.0 bits; conditional E-value: 6.2e-06
GTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHH CS
RrnaAD 29 eekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkklskdeklkvvhqDflkfe 89
e + vl++g G+G +T+++a + k+vv + + ++++ ++++ + d+++ +D+ f+
tr|C3Y6Z7|C3Y6Z7_BRAFL 31 ERGDSVLDVGCGTGRTTQHIAHQGvKSVVGIDKSPDFISYTKENAE-DTNVSFSVADIQRFS 91
47799***************88877*****************9666.999988888877665 PP
== domain 2 score: -3.4 bits; conditional E-value: 5.1
CTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEE CS
RrnaAD 95 tekdsihqeflvvanlPyeistqlvkqlleesrfglvk 132
t+k+ ++ + v an+ ++ l ll+ + + +k
tr|C3Y6Z7|C3Y6Z7_BRAFL 691 TNKFYKKFRVEVSANIWSSTTSRLLLELLKTNNDE-RK 727
45777888888999999999999999999866664.33 PP
>> tr|C3ZHD7|C3ZHD7_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_99360 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 16.4 0.0 4.7e-06 0.0058 9 82 .. 45 124 .. 39 150 .. 0.81
2 ? -2.8 0.0 3.2 4e+03 211 234 .. 150 173 .. 146 183 .. 0.80
Alignments for each domain:
== domain 1 score: 16.4 bits; conditional E-value: 4.7e-06
G--EE--HHHHHHHHHHH-GG.....TTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTTTCCCEEEE- CS
RrnaAD 9 gqnflknkkvineIldklnle.....ekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkklskdeklkvvh 82
+ ++ ++ + +eI + l + e +tvl++g G+G ++ +a++ k+v ++ ++++ + +k s++ek+
tr|C3ZHD7|C3ZHD7_BRAFL 45 TDSYSSSQPIQQEIAVMLMHQnfewqEGDTVLDVGCGTGEISKYVAQQHgvKSVEAFDVSPDMVRHARK-NSPHEKVAYHI 124
56667777777777665555555587********************99999*****************9.55788887655 PP
== domain 2 score: -2.8 bits; conditional E-value: 3.2
HHHHCTTTSBCCCHCCCTSTCHHH CS
RrnaAD 211 rkllnrkrktlstslksllpggel 234
++++ k++ +++++++l +gge
tr|C3ZHD7|C3ZHD7_BRAFL 150 LHWIEEKERVIRNVFSTLKQGGEF 173
589999999999999998888775 PP
>> tr|C3YV83|C3YV83_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_70257 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.8 0.0 2.9e-05 0.036 18 105 .. 67 158 .. 56 169 .. 0.77
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 2.9e-05
HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S...-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCC CS
RrnaAD 18 vineIldklnleekltvleigpGkGilTeeLakra.kqvvvlEl...derLakllqkklskdeklkvvhqDflkfetpeevtekdsi 100
i+ ++dk+ + e ++vl++g+G G + La v++ El ++ l+++ +++++ v D+l++++ ee ++
tr|C3YV83|C3YV83_BRAFL 67 PIQMAIDKIGIGEGDKVLDVGSGIGGPARFLAHATkCDVTACELlpeNHDIGVDLTNRSGMGNNVTHVCGDILTADLGEESFDSIMS 153
5899*************************9999996789999972224455555666555899999999999999999877665554 PP
CCEEE CS
RrnaAD 101 hqefl 105
q f
tr|C3YV83|C3YV83_BRAFL 154 IQVFF 158
44444 PP
>> tr|C3YPV1|C3YPV1_BRAFL Uncharacterized protein (Fragment) OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_215283 PE=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 14.1 0.0 2.3e-05 0.029 32 94 .. 34 99 .. 20 135 .. 0.83
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 2.3e-05
SEEEEES-TTTCCHH.HHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHH CS
RrnaAD 32 ltvleigpGkGilTe.eLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpeev 94
+ v+++g+G+Gil+ ++ a++v ++E ++La++++k ++ +++++v+h + + e+pe++
tr|C3YPV1|C3YPV1_BRAFL 34 KVVVDVGAGTGILSLfSVQAGARKVYAIEA-SVLAEETRKVVKangMEGRIEVLHGRAEEVELPEKA 99
679**********963556667*******7.89*******99999999*******999999999865 PP
>> tr|C3ZV20|C3ZV20_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_127706 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.1 0.0 9.3e-05 0.11 18 58 .. 67 110 .. 63 132 .. 0.82
Alignments for each domain:
== domain 1 score: 12.1 bits; conditional E-value: 9.3e-05
HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE CS
RrnaAD 18 vineIldklnleekltvleigpGkGilTeeLakra...kqvvvl 58
+ + I+d+ +l ++ tvle+g+G+G+l ak + ++vv+
tr|C3ZV20|C3ZV20_BRAFL 67 LSQYIVDQPELVQTRTVLELGAGTGLLGLVAAKLSpcpRKVVLT 110
5678*********************9987777766666777765 PP
>> tr|C3YQN5|C3YQN5_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_82679 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.6 0.0 0.00028 0.34 19 60 .. 47 89 .. 35 134 .. 0.75
2 ? -0.6 0.0 0.71 8.9e+02 53 76 .. 134 157 .. 115 166 .. 0.67
Alignments for each domain:
== domain 1 score: 10.6 bits; conditional E-value: 0.00028
HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S CS
RrnaAD 19 ineIldklnleekltvleigpGkGilTeeLakra.kqvvvlEl 60
++ +++ l ++e vl++g+G G ++ La a +v++ El
tr|C3YQN5|C3YQN5_BRAFL 47 VDAAIKLLGIREGARVLDVGSGIGGPSRYLAHKAkCHVTASEL 89
6778899999********************9999456667665 PP
== domain 2 score: -0.6 bits; conditional E-value: 0.71
SEEEEE-S-HHHHHHHHCHTTTCC CS
RrnaAD 53 kqvvvlElderLakllqkklskde 76
+ v +E+ +rL+ +l++ l++++
tr|C3YQN5|C3YQN5_BRAFL 134 QAVCYVEDKRRLFRHLSNSLKPGG 157
445568999999999999887665 PP
>> tr|C3XW86|C3XW86_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_117147 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 0.00017 0.2 19 70 .. 197 249 .. 188 270 .. 0.81
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00017
HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHC CS
RrnaAD 19 ineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqk 70
++++ + l +tvl+ig+G+Gil+ ++ + v + E+ + + +l ++
tr|C3XW86|C3XW86_BRAFL 197 FHQAIQRAVLGGHDTVLDIGTGTGILSMFAVQCGaRTVHACEMSRTMHQLASN 249
567888888999**************985555447999999999888877655 PP
>> tr|C3XPE3|C3XPE3_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_124175 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 0.00017 0.21 22 87 .. 220 294 .. 215 307 .. 0.85
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00017
HHHHH-GG....TTSEEEEES-TTTCCHHHH..HCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCG CS
RrnaAD 22 Ildklnle....ekltvleigpGkGilTeeL..akrakqvvvlElderLakllqkkls...kdeklkvvhqDflk 87
I +kl + e +tv+++++G G +T ++ a +v + E ++ ++ lqk+l+ + + +v h D +
tr|C3XPE3|C3XPE3_BRAFL 220 ITEKLRVArmgcEGQTVVDLYAGIGYFTLPFlvHGKAAEVHACEWNPAAVEALQKNLQinkVQDRCTVHHGDNRQ 294
55566666777899****************943344599****************99998889999999999766 PP
>> tr|C3XVW9|C3XVW9_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_106799 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.7 0.0 0.00026 0.33 11 62 .. 471 522 .. 465 534 .. 0.87
Alignments for each domain:
== domain 1 score: 10.7 bits; conditional E-value: 0.00026
-EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-H CS
RrnaAD 11 nflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElde 62
n l + ++ ++ d + +++ tvl++ G+G Lak +k+v +El +
tr|C3XVW9|C3XVW9_BRAFL 471 NTLAAEVLYSKVADWCDFTKDSTVLDVCCGTGTIGLTLAKHVKKVIGVELCQ 522
556778899999*********************************9999755 PP
>> tr|C3ZSK0|C3ZSK0_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_63343 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 0.00017 0.21 9 70 .. 42 104 .. 37 138 .. 0.84
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 0.00017
G--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHC CS
RrnaAD 9 gqnflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqk 70
g n++ kv++ + l e + vl++++G+G+l +eL k +v +l ++++ + ++
tr|C3ZSK0|C3ZSK0_BRAFL 42 GANYTGPWKVAEAVAASLGNERNARVLDVAAGTGFLGVELSKLGfTNVDALDASQEMLDVAKT 104
566777777788888888888999****************99987999999988888887776 PP
>> tr|C3ZJJ0|C3ZJJ0_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_121459 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 3.2 0.0 0.048 60 30 70 .. 62 103 .. 36 115 .. 0.79
2 ? 5.7 0.0 0.0083 10 30 71 .. 223 265 .. 199 277 .. 0.83
Alignments for each domain:
== domain 1 score: 3.2 bits; conditional E-value: 0.048
TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHC CS
RrnaAD 30 ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqk 70
+ +l++++G+G+ e L k+ ++ +lE e+++ l ++
tr|C3ZJJ0|C3ZJJ0_BRAFL 62 DGVRILDVAAGTGMSGEALQKIGfCSLDALEPSEEMLLLAKE 103
55689**************99977888888888887766665 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.0083
TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCH CS
RrnaAD 30 ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkk 71
+ +l++++G+G+ e L k +++ +lE e+++ l ++k
tr|C3ZJJ0|C3ZJJ0_BRAFL 223 DGVRILDVAAGTGMSGEALYKVGfRSMDALEPSEDMLLLAKEK 265
55679***************9988*******999998777764 PP
>> tr|C3ZBH4|C3ZBH4_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_260172 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.0 0.0 0.00042 0.53 31 70 .. 127 166 .. 104 174 .. 0.87
Alignments for each domain:
== domain 1 score: 10.0 bits; conditional E-value: 0.00042
TSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHC CS
RrnaAD 31 kltvleigpGkGilTeeLakrakqvvvlElderLakllqk 70
+l++g+G G+ T+++ +++v v E+ + + ++lq+
tr|C3ZBH4|C3ZBH4_BRAFL 127 AERLLDLGAGDGNVTRIMSGHFQEVFVTEQSPPMRERLQE 166
5679**********************************99 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 28542 (13248087 residues searched)
Passed MSV filter: 761 (0.0266625); expected 570.8 (0.02)
Passed bias filter: 576 (0.0201808); expected 570.8 (0.02)
Passed Vit filter: 87 (0.00304814); expected 28.5 (0.001)
Passed Fwd filter: 23 (0.00080583); expected 0.3 (1e-05)
Initial search space (Z): 28542 [actual number of targets]
Domain search space (domZ): 23 [number of targets reported over threshold]
# CPU time: 0.31u 0.01s 00:00:00.32 Elapsed: 00:00:00.11
# Mc/sec: 31915.85
//
[ok]