# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/RrnaAD.hmm.txt # target sequence database: proteomes/Caenorhabditis_elegans.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: RrnaAD [M=265] Accession: PF00398.19 Description: Ribosomal RNA adenine dimethylase Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.3e-60 203.6 0.1 4.4e-60 203.2 0.1 1.1 1 sp|Q09522|DIM1_CAEEL Probable dimethyladenosine transferas 1.7e-43 148.8 0.0 3e-43 148.0 0.0 1.4 2 sp|P91424|TFB1M_CAEEL Dimethyladenosine transferase 1, mito 0.00024 20.4 0.1 0.00028 20.2 0.1 1.1 1 tr|Q9GZF8|Q9GZF8_CAEEL PRotein arginine MethylTransferase OS 0.00031 20.1 0.0 0.00047 19.5 0.0 1.2 1 tr|O02325|O02325_CAEEL PRotein arginine MethylTransferase OS 0.00054 19.3 0.0 0.0017 17.6 0.0 1.7 2 tr|Q17539|Q17539_CAEEL Uncharacterized protein OS=Caenorhabd 0.0017 17.7 0.7 0.0094 15.2 0.0 2.5 3 tr|Q20856|Q20856_CAEEL Histone-lysine N-methyltransferase, H 0.0065 15.7 0.0 0.013 14.7 0.0 1.5 1 tr|H2KZF5|H2KZF5_CAEEL Phosphoethanolamine MethylTransferase 0.0067 15.7 0.0 0.0099 15.1 0.0 1.2 1 tr|Q20794|Q20794_CAEEL Histone-lysine N-methyltransferase, H 0.0091 15.2 0.0 0.019 14.2 0.0 1.5 1 tr|Q22123|Q22123_CAEEL Uncharacterized protein OS=Caenorhabd ------ inclusion threshold ------ 0.011 15.0 0.0 0.014 14.7 0.0 1.2 1 sp|Q27873|PIMT_CAEEL Protein-L-isoaspartate O-methyltransf 0.013 14.7 0.0 0.021 14.1 0.0 1.3 1 tr|Q6AW06|Q6AW06_CAEEL Histone-lysine N-methyltransferase, H 0.035 13.3 0.0 0.085 12.1 0.0 1.6 1 tr|Q23200|Q23200_CAEEL Histone-lysine N-methyltransferase, H 0.08 12.2 0.0 0.15 11.3 0.0 1.5 1 tr|K8ERZ6|K8ERZ6_CAEEL Uncharacterized protein OS=Caenorhabd 0.082 12.1 0.0 0.13 11.4 0.0 1.3 1 tr|Q2MDF2|Q2MDF2_CAEEL Methyltransferase-like protein OS=Cae Domain annotation for each sequence (and alignments): >> sp|Q09522|DIM1_CAEEL Probable dimethyladenosine transferase OS=Caenorhabditis elegans OX=6239 GN=E02H1.1 PE=3 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 203.2 0.1 3.1e-63 4.4e-60 4 225 .. 24 236 .. 22 272 .. 0.95 Alignments for each domain: == domain 1 score: 203.2 bits; conditional E-value: 3.1e-63 CXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHH CS RrnaAD 4 lrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflkfe 89 ++++ gq++lkn+ v+n I++k+ l+ ++tvle+gpG+G+lT+++++ ak v + E+d+r++++++k++ +++kl+v D++k+e sp|Q09522|DIM1_CAEEL 24 FNTDKGQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVAKTVIACEIDPRMIAEVKKRVMgtpLQNKLQVNGGDVMKME 112 68999****************************************************************99999*************** PP HHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCE CS RrnaAD 90 tpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksif 178 p + +vanlPy+is+++v +ll ++r+ ++++l++qkefa rl+arpg+k++srlsv++++++ v++++kv ++ f sp|Q09522|DIM1_CAEEL 113 WPFFD----------VCVANLPYQISSPFVQKLL-LHRPLPRYAVLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEF 190 99977..........7******************.788888************************************************ PP CS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHC CS RrnaAD 179 sPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstsl 225 +Pppkvdsa+v++ +k+++ p ++ ++e ++r ++ rk+ktl + + sp|Q09522|DIM1_CAEEL 191 RPPPKVDSAVVRIAPKNPP-PPVNFVEWEGLLRLCFMRKNKTLMAIF 236 ******************9.7889999***************98754 PP >> sp|P91424|TFB1M_CAEEL Dimethyladenosine transferase 1, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=tfbm-1 PE= # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 148.0 0.0 2.1e-46 3e-43 3 254 .. 23 287 .. 21 307 .. 0.92 2 ? -3.2 0.1 2.6 3.8e+03 177 187 .. 345 355 .. 328 355 .. 0.77 Alignments for each domain: == domain 1 score: 148.0 bits; conditional E-value: 2.1e-46 CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGH CS RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls.kdeklkvvhqDflkf 88 +++k ++qn+l + ++ +I +++++ ek+ v+eigpG+G T+ +++ + v+E+d+r++ +lq+ + d+++ + hqD+l + sp|P91424|TFB1M_CAEEL 23 RAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGITRAILEAGaSRLDVVEIDNRFIPPLQHLAEaADSRMFIHHQDALRT 110 678899****************************************998879*****************88899************** PP HHHHHHCT..........TTCCCCEEEEEEE--TTTHHHHHHHHHH.......GGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHH CS RrnaAD 89 etpeevte..........kdsihqeflvvanlPyeistqlvkqlle.......esrfglvkmllwlqkefarrllarpgskkrsrlsv 159 e+ + +ds + v++nlP +i ++l+ ++l + g+v +l +q e+a+rl+++ rsr+s+ sp|P91424|TFB1M_CAEEL 111 EIGDIWKNetarpesvdwHDSNLPAMHVIGNLPFNIASPLIIKYLRdmsyrrgVWQYGRVPLTLTFQLEVAKRLCSPIACDTRSRISI 198 ****77779*******999999999***********************99999777789***************************** PP HHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTC CS RrnaAD 160 lreaftdvklvakveksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqalsstgindnal 247 +++++++ k+v ++ s+f P p+vd +v+ +++++l + + +++e+v+r+++ ++k + + lk+l+p++ + ls+ +l sp|P91424|TFB1M_CAEEL 199 MSQYVAEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVNTSFEVLEKVCRQVFHYRQKYVTKGLKTLYPEELEDELSD------DL 280 *************************************9999******************************999887755......33 PP CCCSGHH CS RrnaAD 248 vkklsae 254 +kk++++ sp|P91424|TFB1M_CAEEL 281 LKKCRID 287 4444433 PP == domain 2 score: -3.2 bits; conditional E-value: 2.6 CECS--SSSEE CS RrnaAD 177 ifsPppkvdsa 187 if P p++dsa sp|P91424|TFB1M_CAEEL 345 IFAPAPTIDSA 355 9********97 PP >> tr|Q9GZF8|Q9GZF8_CAEEL PRotein arginine MethylTransferase OS=Caenorhabditis elegans OX=6239 GN=prmt-4 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 20.2 0.1 1.9e-07 0.00028 28 96 .. 36 104 .. 13 125 .. 0.82 Alignments for each domain: == domain 1 score: 20.2 bits; conditional E-value: 1.9e-07 GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCT CS RrnaAD 28 leekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevte 96 l ++++vl+ig G G+ ++ +++ ++vv + + +++++ ++ +++e++ h ++ +f++ e+ + tr|Q9GZF8|Q9GZF8_CAEEL 36 L-KDKKVLDIGCGNGLNSTTFLQWGaRKVVGFDNSQEMIENCKNLHKSSEQSSFHHLNVTDFQLDEKFHV 104 3.6789***************88877******************999****************9996655 PP >> tr|O02325|O02325_CAEEL PRotein arginine MethylTransferase OS=Caenorhabditis elegans OX=6239 GN=prmt-9 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 19.5 0.0 3.3e-07 0.00047 32 94 .. 168 233 .. 146 283 .. 0.80 Alignments for each domain: == domain 1 score: 19.5 bits; conditional E-value: 3.3e-07 SEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHH CS RrnaAD 32 ltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpeev 94 + v +ig+G+Gil+++ a + v++lE L + ++ l+ +++++v ++ +fet e++ tr|O02325|O02325_CAEEL 168 TVVFDIGSGTGILSAIAARKTNLVTALEENMCLTMISKEVLKrngVESRVNVHAKNSTYFETCEKA 233 6799***********************************9999999****************9944 PP >> tr|Q17539|Q17539_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=C01B10.8 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 1.6 2.2e+03 20 49 .. 37 65 .. 22 67 .. 0.77 2 ! 17.6 0.0 1.2e-06 0.0017 31 86 .. 459 517 .. 448 534 .. 0.86 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 1.6 HHHHHHH-GGTTSEEEEES-TTTCCHHHHH CS RrnaAD 20 neIldklnleekltvleigpGkGilTeeLa 49 +++dk +l++k+t l +g G l ++L tr|Q17539|Q17539_CAEEL 37 SNVIDK-YLKPKDTFLQLGCGNSELATQLY 65 555555.69999999999999999999885 PP == domain 2 score: 17.6 bits; conditional E-value: 1.2e-06 TSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CC CS RrnaAD 31 kltvleigpGkGilTeeLakra..kqvvvlElderLakllqkkls...kdeklkvvhqDfl 86 k+ vl g G G+lT+ L+ + +v+++Eld++ +k+ + ++s +d ++ vv qD+l tr|Q17539|Q17539_CAEEL 459 KMAVL--GLGGGLLTAYLVRHFkkAHVTAVELDPEVLKIANSHFSfphSDARIDVVIQDAL 517 45554..567889*********86689*******************99***********87 PP >> tr|Q20856|Q20856_CAEEL Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Caenorhabditis elegans OX=6239 G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -2.4 0.0 1.5 2.2e+03 207 240 .. 15 48 .. 6 87 .. 0.76 2 ! 15.2 0.0 6.5e-06 0.0094 19 148 .. 165 308 .. 160 329 .. 0.74 3 ? -1.4 0.1 0.79 1.1e+03 66 92 .. 354 378 .. 345 382 .. 0.73 Alignments for each domain: == domain 1 score: -2.4 bits; conditional E-value: 1.5 HHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT. CS RrnaAD 207 esvvrkllnrkrktlstslksllpggelqalsst 240 +++ +k+l+ + l + l++++p+g+ ++ s+ tr|Q20856|Q20856_CAEEL 15 DKIESKMLEDETDLLHETLSTVFPNGKSIKFDSH 48 5666777777777888888888888877777665 PP == domain 2 score: 15.2 bits; conditional E-value: 6.5e-06 HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTT...........TCCCEEEE-S-CCGHHHHH CS RrnaAD 19 ineIldklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkkls...........kdeklkvvhqDflkfetpe 92 i +I+d+l+l+ ++ +++g+G G l +a ++ k+ v +El ++ a+ + +++ +++++ Dfl ++ tr|Q20856|Q20856_CAEEL 165 IGSIVDELKLNSSDVFVDLGSGIGQLVCFVAAYSkvKKAVGIELSSVPAEYAVSQGMyfknlmtffdkQHGEIELIQGDFLHPQFHD 251 568******************************999*******998766543222111234445668999***************** PP HHCTTTCCCCEEEEEEE--T..TTHHHHHHHHHH....GGGGCEEEEEEEEEHHHHHHHH-- CS RrnaAD 93 evtekdsihqeflvvanlPy..eistqlvkqlle....esrfglvkmllwlqkefarrllar 148 + ++ +++ n ++ +v+ ll+ r+ ++ l l++++a r+ a tr|Q20856|Q20856_CAEEL 252 LIC----KEATVIFINNYAFedDLTRRIVFELLQncadGTRI-VSAKPLSLPRSVASRRHAM 308 775....55666666666665567777777777755424444.5667799999999998773 PP == domain 3 score: -1.4 bits; conditional E-value: 0.79 HHHHCHTTTCCCEEEE-S-CCGHHHHH CS RrnaAD 66 kllqkklskdeklkvvhqDflkfetpe 92 k+ +k s ++k+k v +Df k+++++ tr|Q20856|Q20856_CAEEL 354 KESKK--SANSKVKKVGKDFTKTSLKN 378 44444..5678888899**99999887 PP >> tr|H2KZF5|H2KZF5_CAEEL Phosphoethanolamine MethylTransferase OS=Caenorhabditis elegans OX=6239 GN=pmt-1 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.7 0.0 9.1e-06 0.013 21 78 .. 65 122 .. 61 162 .. 0.79 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 9.1e-06 HHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCE CS RrnaAD 21 eIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdekl 78 +Il l l ++ v++ig+G G +T+ La+ a+ v + +++k q++ +++ tr|H2KZF5|H2KZF5_CAEEL 65 DILASLPLLHNKDVVDIGAGIGRFTTVLAETARWVLSTDFIDSFIKKNQERNAHLGNI 122 689999999***********************99988888888888777765555555 PP >> tr|Q20794|Q20794_CAEEL Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Caenorhabditis elegans OX=6239 G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 15.1 0.0 6.9e-06 0.0099 17 70 .. 133 188 .. 129 227 .. 0.91 Alignments for each domain: == domain 1 score: 15.1 bits; conditional E-value: 6.9e-06 HHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHC CS RrnaAD 17 kvineIldklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqk 70 +++ +d+ln+ +++ +++g+G+G l +a +a k+ v +E+ ++La++ ++ tr|Q20794|Q20794_CAEEL 133 EQMASFVDELNIGPNDHFMDLGSGVGQLVSFVAAYAqtKKSVGVEIMPNLAQMARA 188 5678899********************************************99887 PP >> tr|Q22123|Q22123_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_T03G11.6 PE=1 SV=2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 14.2 0.0 1.3e-05 0.019 29 84 .. 105 162 .. 76 174 .. 0.74 Alignments for each domain: == domain 1 score: 14.2 bits; conditional E-value: 1.3e-05 G.TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S- CS RrnaAD 29 e.ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls.kdeklkvvhqD 84 + +++vl++g+G G Te++ +++v + El +++ ++l+ k + l++ ++D tr|Q22123|Q22123_CAEEL 105 NsTDKKVLDLGAGNGDITEHMRPFFEHVYATELSSKMRNRLSWKGYnVLSALEWAETD 162 257889********************************99986533366666666666 PP >> sp|Q27873|PIMT_CAEEL Protein-L-isoaspartate O-methyltransferase OS=Caenorhabditis elegans OX=6239 GN=pcm-1 PE=2 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.7 0.0 9.5e-06 0.014 32 85 .. 80 143 .. 61 218 .. 0.78 Alignments for each domain: == domain 1 score: 14.7 bits; conditional E-value: 9.5e-06 SEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTT.......TCCCEEEE-S-C CS RrnaAD 32 ltvleigpGkGilTeeLakra...kqvvvlElderLakllqkkls.......kdeklkvvhqDf 85 + l++g+G G lT+ +a ++ vv +E ++L++l +k+++ + +++ +++ D+ sp|Q27873|PIMT_CAEEL 80 AKALDVGSGSGYLTVCMAMMVgrnGTVVGIEHMPQLVELSEKNIRkhhseqlERGNVIIIEGDG 143 5679****************9965568889************9995544444445555566655 PP >> tr|Q6AW06|Q6AW06_CAEEL Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Caenorhabditis elegans OX=6239 G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 14.1 0.0 1.5e-05 0.021 13 96 .. 175 271 .. 162 328 .. 0.75 Alignments for each domain: == domain 1 score: 14.1 bits; conditional E-value: 1.5e-05 E--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HH...HHHHHHCHTT........TCCCEEEE-S-CC CS RrnaAD 13 lknkkvineIldklnleekltvleigpGkGilTeeLakra..kqvvvlElder...Lakllqkkls........kdeklkvvhqDfl 86 ++n+ + +I+d+ln+ +++ +++g+G G l a +a k+ v +El ++ +a+ l ++ +++k + ++ Dfl tr|Q6AW06|Q6AW06_CAEEL 175 ETNPEQLISIIDELNIGPQDVFVDLGSGIGQLVCLTAAYAkcKKSVGIELSQVpsnFAQDLAGYFKkfmshfgkNHGKFEHIQGDFL 261 58999999**********************99887788888899*****98751114444433333555688888899999999999 PP GHHHHHHHCT CS RrnaAD 87 kfetpeevte 96 + ++++ + e tr|Q6AW06|Q6AW06_CAEEL 262 NPKFKQLICE 271 9998887766 PP >> tr|Q23200|Q23200_CAEEL Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Caenorhabditis elegans OX=6239 G # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 12.1 0.0 5.9e-05 0.085 19 73 .. 134 190 .. 131 210 .. 0.84 Alignments for each domain: == domain 1 score: 12.1 bits; conditional E-value: 5.9e-05 HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTT CS RrnaAD 19 ineIldklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkkls 73 +++ +d+ln+ +++ +++g+G G+l + +a +a + v +El +La++ +k+ + tr|Q23200|Q23200_CAEEL 134 MASFVDQLNMGPSDYFMDLGSGIGHLVNFVAAYArtQMSVGVELMDNLAEIAEKNKE 190 66789*****************************85556779*99999999988554 PP >> tr|K8ERZ6|K8ERZ6_CAEEL Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F13D12.9 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.3 0.0 0.0001 0.15 18 47 .. 224 253 .. 220 315 .. 0.84 Alignments for each domain: == domain 1 score: 11.3 bits; conditional E-value: 0.0001 HHHHHHHHH-GGTTSEEEEES-TTTCCHHH CS RrnaAD 18 vineIldklnleekltvleigpGkGilTee 47 i++ +d+l+l+ ++ vleig G G+ + tr|K8ERZ6|K8ERZ6_CAEEL 224 KIDRLIDQLELKADDHVLEIGCGWGAAAIR 253 6899********************997655 PP >> tr|Q2MDF2|Q2MDF2_CAEEL Methyltransferase-like protein OS=Caenorhabditis elegans OX=6239 GN=metl-2 PE=1 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.4 0.0 9.2e-05 0.13 24 51 .. 110 138 .. 87 145 .. 0.73 Alignments for each domain: == domain 1 score: 11.4 bits; conditional E-value: 9.2e-05 HHH-GG.TTSEEEEES-TTTCCHHHHHCC CS RrnaAD 24 dklnle.ekltvleigpGkGilTeeLakr 51 d++nl+ ek ++le+g G+G++T +L++ tr|Q2MDF2|Q2MDF2_CAEEL 110 DESNLQkEKIEILEVGCGVGNTTFPLLQV 138 55666699***************999875 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (265 nodes) Target sequences: 20008 (8229220 residues searched) Passed MSV filter: 630 (0.0314874); expected 400.2 (0.02) Passed bias filter: 386 (0.0192923); expected 400.2 (0.02) Passed Vit filter: 58 (0.00289884); expected 20.0 (0.001) Passed Fwd filter: 14 (0.00069972); expected 0.2 (1e-05) Initial search space (Z): 20008 [actual number of targets] Domain search space (domZ): 14 [number of targets reported over threshold] # CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.07 # Mc/sec: 31153.48 // [ok]