# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/RrnaAD.hmm.txt
# target sequence database: proteomes/Ciona_intestinalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: RrnaAD [M=265]
Accession: PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-39 135.0 0.0 2.9e-39 134.7 0.0 1.1 1 tr|F6SN27|F6SN27_CIOIN rRNA adenine N(6)-methyltransferase O
------ inclusion threshold ------
0.048 12.6 0.1 0.076 12.0 0.1 1.2 1 tr|F6UIA2|F6UIA2_CIOIN Protein arginine N-methyltransferase
0.063 12.2 0.0 0.1 11.5 0.0 1.3 1 tr|F6X5I5|F6X5I5_CIOIN Uncharacterized protein OS=Ciona inte
0.079 11.9 0.0 0.15 11.0 0.0 1.4 1 tr|F6UIG7|F6UIG7_CIOIN Uncharacterized protein OS=Ciona inte
0.14 11.1 0.0 0.2 10.6 0.0 1.2 1 tr|F6WK17|F6WK17_CIOIN Uncharacterized protein OS=Ciona inte
Domain annotation for each sequence (and alignments):
>> tr|F6SN27|F6SN27_CIOIN rRNA adenine N(6)-methyltransferase OS=Ciona intestinalis OX=7719 GN=LOC100181797 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 134.7 0.0 8.6e-43 2.9e-39 3 237 .. 42 291 .. 40 325 .. 0.88
Alignments for each domain:
== domain 1 score: 134.7 bits; conditional E-value: 8.6e-43
CCXXGCG--EE--HHHHHHHH.HHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CC CS
RrnaAD 3 klrksygqnflknkkvineIl.dklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls.kdeklkvvhqDfl 86
++rk+++qnfl ++ + n+ + ++ v e+gpG+G T+++++r + ++v+E+d r++ +l+ ++ ++++vh D+l
tr|F6SN27|F6SN27_CIOIN 42 RARKQLSQNFLLDPLITNRFVlCGAKDLAGHHVCEVGPGPGPITRSILQRKpERLTVVEKDHRFLPMLKYVADvSNDRMTIVHGDIL 128
689***************966155666699*********************9*****************966699************ PP
GHHHHHHHCT.....TTCCCCEEEEEEE--TTTHHHHHHHHHH.......GGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHH CS
RrnaAD 87 kfetpeevte.....kdsihqeflvvanlPyeistqlvkqlle.......esrfglvkmllwlqkefarrllarpgskkrsrlsvlr 161
k+++ + + + +f+v++nlP ++s +l+++++e + + g+ +l +q+e+++r la+ g+k+r+rlsv +
tr|F6SN27|F6SN27_CIOIN 129 KYDLSQCFPQelakdWHKASPPFIVFGNLPFNVSLPLIFKWFEqisrkdgMFKLGRIPLVLTFQREVVERFLAQTGDKQRCRLSVSA 215
**98775555666555566789*************************988666777789999************************* PP
HHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S.--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHC CS
RrnaAD 162 eaftdvklvakveksifsPppkvdsalvelerkdedl.pqkdlkkyesvvrkllnrkrktlstslksllpggelqal 237
+ f+d+ ++ +f Pppkv+ +v++ +k++ + ++ kk ++vv++ + rk+k + s k+++p ++ +++
tr|F6SN27|F6SN27_CIOIN 216 QNFCDIDYKFIIAGGSFVPPPKVEVGVVKIVPKKT-FdINLPFKKIDYVVKHTMHRKSKYCKHSVKTMFPPKRSDLV 291
******9999999999****************999.7679999***************************9987766 PP
>> tr|F6UIA2|F6UIA2_CIOIN Protein arginine N-methyltransferase OS=Ciona intestinalis OX=7719 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.0 0.1 2.3e-05 0.076 30 99 .. 71 143 .. 48 185 .. 0.83
Alignments for each domain:
== domain 1 score: 12.0 bits; conditional E-value: 2.3e-05
TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CCGHHHHHHHCTTTC CS
RrnaAD 30 ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls..kdeklkvvhqDflkfetpeevtekds 99
+ +vl+ig+G+G+l+ a + +++E + +ak+ + + ek++++++ + ++ e++ ek++
tr|F6UIA2|F6UIA2_CIOIN 71 KVAKVLDIGTGTGLLSMMAATAGaEIITAIEVFSPMAKVAEMVTKenGFEKIQIINKHSTEVKLGEDIKEKAN 143
6679************9986655699***********9988855566779********999999998877544 PP
>> tr|F6X5I5|F6X5I5_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.5 0.0 3.1e-05 0.1 21 73 .. 47 99 .. 39 125 .. 0.74
Alignments for each domain:
== domain 1 score: 11.5 bits; conditional E-value: 3.1e-05
HHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT CS
RrnaAD 21 eIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls 73
I++ + +++ vl++g+G+Gil+ a+ k+v ++E +++ak +k ++
tr|F6X5I5|F6X5I5_CIOIN 47 AIFNCYQSLKDKVVLDVGAGTGILSCFCAQAGaKKVYAIEA-SNIAKQAKKVVE 99
4555556669999************98877667******97.567777777666 PP
>> tr|F6UIG7|F6UIG7_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.0 0.0 4.5e-05 0.15 18 92 .. 144 222 .. 130 256 .. 0.77
Alignments for each domain:
== domain 1 score: 11.0 bits; conditional E-value: 4.5e-05
HHHHHHHHH-GG.TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHH CS
RrnaAD 18 vineIldklnle.ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpe 92
++++++ + +++ ++ vl++g+G Gil+ ++ ++v ++E + +a++++k +s ++++ v+ + + +pe
tr|F6UIG7|F6UIG7_CIOIN 144 TYQKAMLQNYINfRDKVVLDVGAGSGILSFFAMQAGaRKVYAVEA-STMAEHTKKLVScsqYAGRIVVIPGKIEEITLPE 222
45666666666678889***********975544336*******7.789****999987766677777766666665555 PP
>> tr|F6WK17|F6WK17_CIOIN Uncharacterized protein OS=Ciona intestinalis OX=7719 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.6 0.0 6e-05 0.2 50 125 .. 177 272 .. 168 298 .. 0.79
Alignments for each domain:
== domain 1 score: 10.6 bits; conditional E-value: 6e-05
CC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CCGHHHHHHHCT.........TTCCCCEEEEEEE--TTTHHHHHHHHHH. CS
RrnaAD 50 krakqvvvlElderLakllqkkls..kdeklkvvhqDflkfetpeevte.........kdsihqeflvvanlPyeistqlvkqlle. 124
k + + El e La+ ++k s +++k kv ++ ++ +t + + +++++ +n+ y+is +l+ ++
tr|F6WK17|F6WK17_CIOIN 177 KLQHTMISTELKEILAEKRRHKESrsSAKKCKVFLYRLVTWMLYLGITGgcmalvyfvNKELLNKIKIWGNIGYQISLALIISAINl 263
5556666789999999999998878899999**9999*******9998899*****999999*******************999997 PP
........G CS
RrnaAD 125 ........e 125
+
tr|F6WK17|F6WK17_CIOIN 264 vmpifinlM 272
744444440 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 16678 (5370518 residues searched)
Passed MSV filter: 565 (0.033877); expected 333.6 (0.02)
Passed bias filter: 313 (0.0187672); expected 333.6 (0.02)
Passed Vit filter: 39 (0.00233841); expected 16.7 (0.001)
Passed Fwd filter: 5 (0.000299796); expected 0.2 (1e-05)
Initial search space (Z): 16678 [actual number of targets]
Domain search space (domZ): 5 [number of targets reported over threshold]
# CPU time: 0.12u 0.00s 00:00:00.12 Elapsed: 00:00:00.04
# Mc/sec: 35579.68
//
[ok]