# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/RrnaAD.hmm.txt
# target sequence database: proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: RrnaAD [M=265]
Accession: PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.5e-66 222.9 0.0 5.3e-66 222.6 0.0 1.1 1 tr|F6QCM9|F6QCM9_MONDO rRNA adenine N(6)-methyltransferase O
3.9e-40 137.9 0.0 4.9e-40 137.5 0.0 1.1 1 tr|F7EKY1|F7EKY1_MONDO rRNA adenine N(6)-methyltransferase O
2.6e-08 33.5 0.1 3.9e-08 32.9 0.1 1.3 1 tr|K7E385|K7E385_MONDO rRNA adenine N(6)-methyltransferase O
1.9e-05 24.1 0.0 2.9e-05 23.5 0.0 1.3 1 tr|F7FVV1|F7FVV1_MONDO Ribosomal RNA adenine dimethylase dom
------ inclusion threshold ------
0.03 13.6 0.0 0.068 12.5 0.0 1.5 1 tr|F6WM17|F6WM17_MONDO Protein arginine methyltransferase 9
0.073 12.4 0.0 0.12 11.7 0.0 1.4 1 tr|F6XFW3|F6XFW3_MONDO Methyltransferase like 22 OS=Monodelp
Domain annotation for each sequence (and alignments):
>> tr|F6QCM9|F6QCM9_MONDO rRNA adenine N(6)-methyltransferase OS=Monodelphis domestica OX=13616 GN=DIMT1 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 222.6 0.0 1.5e-69 5.3e-66 4 238 .. 98 323 .. 95 346 .. 0.94
Alignments for each domain:
== domain 1 score: 222.6 bits; conditional E-value: 1.5e-69
CXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCG CS
RrnaAD 4 lrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflk 87
+++ +gq++lkn+ ++n+I+dk+ l++++ vle+gpG+G++T++L++ ak+vv+ Eld+rL+++l k+++ +++kl+v+ D+lk
tr|F6QCM9|F6QCM9_MONDO 98 FNTGLGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQgtpQASKLQVMVGDVLK 184
78999******************************************************************999************* PP
HHHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC- CS
RrnaAD 88 fetpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakve 174
+++p + ++vanlPy+is+++v++ll ++r+ ++ ++l++q+efa rl+a+pg+k+++rls+++++++ v +++kv+
tr|F6QCM9|F6QCM9_MONDO 185 TDLPFFD----------ACVANLPYQISSPFVFKLL-LHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 260
*****77..........8******************.788889******************************************** PP
GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCT CS
RrnaAD 175 ksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqals 238
k++f+Pppkv+s++v++e+k+++ p + ++++ +vr+ ++rk+ktls+++ks ++ l++++
tr|F6QCM9|F6QCM9_MONDO 261 KNNFRPPPKVESSVVRIEPKNPP-PPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNY 323
**********************8.89************************99888877777664 PP
>> tr|F7EKY1|F7EKY1_MONDO rRNA adenine N(6)-methyltransferase OS=Monodelphis domestica OX=13616 GN=TFB1M PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.5 0.0 1.4e-43 4.9e-40 3 246 .. 28 284 .. 26 302 .. 0.89
Alignments for each domain:
== domain 1 score: 137.5 bits; conditional E-value: 1.4e-43
CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CC CS
RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeL.akrakqvvvlElderLakllqkkls..kdeklkvvhqDfl 86
+++k+++qnfl + + ++I++k+ ++ v+e+gpG+G++T+++ + ++ + v+E+d+r++ lq ls +kl +vh D+l
tr|F7EKY1|F7EKY1_MONDO 28 RAQKQLSQNFLLDLRLTDKIVRKTGDLKNAHVYEVGPGPGAFTRSIlNAQVADLLVVEKDTRFIPGLQM-LSdaAPGKLRIVHGDVL 113
6789****************************************9945566******************.5558889********** PP
GHHHHHHHCT.....TTCCCCEEEEEEE--TTTHHHHHHHHHH.......GGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHH CS
RrnaAD 87 kfetpeevte.....kdsihqeflvvanlPyeistqlvkqlle.......esrfglvkmllwlqkefarrllarpgskkrsrlsvlr 161
+f++ e + + +++nlP +st+l+ ++le g+ +m+l +qke+a+rl+a g+k+rsrls+++
tr|F7EKY1|F7EKY1_MONDO 114 TFKVERMFPEhlkrrWEDDPPNVYIIGNLPFSVSTPLIIKWLEniskrdgPFVYGRTQMTLTFQKEVAERLTAGTGNKQRSRLSIMA 200
***99966668877633444568899*******************988775556789****************************** PP
HHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTT CS
RrnaAD 162 eaftdvklvakveksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqalsstgindna 246
++++ v +++ ++f P+p+vd +v ++ ++ ++ k e+vv+ + +rk + l+p++e+ +++++ + + a
tr|F7EKY1|F7EKY1_MONDO 201 QYLCKVDNSFIIPGRAFVPKPEVDVGVVHFTPLVQPQINQPFKLVEKVVQSTFQFRRKYCHHGIGILFPQAERSKNTEK-MLMLA 284
********************************9886567789999****************************999885.44444 PP
>> tr|K7E385|K7E385_MONDO rRNA adenine N(6)-methyltransferase OS=Monodelphis domestica OX=13616 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.9 0.1 1.1e-11 3.9e-08 45 263 .. 3 265 .. 1 267 [. 0.84
Alignments for each domain:
== domain 1 score: 32.9 bits; conditional E-value: 1.1e-11
HHHHHCC-SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGHHHHHHHCT...................TTCCCCEEEEEEE-- CS
RrnaAD 45 TeeLakrakqvvvlElderLakllqkkls.kdeklkvvhqDflkfetpeevte...................kdsihqeflvvanlP 111
T L++ qv +lE d+ ++ l+ + ++++l+v+ +Df + ++ + + ++v+ P
tr|K7E385|K7E385_MONDO 3 TSALLNAGLQVIALERDRTFLPYLESLKNhLNGQLEVIYCDFFSRDPSNNRATtppplftetlfknfgireiPWEADVPVKIVGFFP 89
778888889************99999444899***************9977779***************999889999********* PP
T.TTHHHHHHHHHH......GGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GG.............CE CS
RrnaAD 112 y.eistqlvkqlle......esrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveks.............if 178
+ ++l k l + + g+ + + + ++ +++++++p +k ++ lsvl +++ ++kl+ + s +
tr|K7E385|K7E385_MONDO 90 VkNERSALWKFLYDlyscssIYDYGRIELNMFISEKEYKKIISKPDEKFYQPLSVLCQTAYEIKLLHMEPLSsfvtfksgkfqsfKC 176
9777788888888899999988899999**************************************9999999**********9955 PP
CS--SSSEEEEEEEE-SS-S.--S...-HHHHHHHHHHHHCTTTSBCCCHCCC..TSTCHHHHHCTT.T--TTTCCCCSGHHHHHHH CS
RrnaAD 179 sPppkvdsalvelerkdedl.pqk...dlkkyesvvrkllnrkrktlstslks..llpggelqalsstgindnalvkklsaeqtldi 259
++ + + ++l+++ + + +++ + ++ ++v++++++++ +l ++s + ++g l ++ n+ ++v+ l++e++ +
tr|K7E385|K7E385_MONDO 177 KESKNKHLNFIRLTPRRNLFtDNLtpmNSCNFMYLVKQCFTKRKYKLIDLFNSwsICNKGDLLQQLNR--NKHDPVGSLEPEEFKYL 261
88889999*********99977652225679**********999887655554114444443333344..88889999999988888 PP
HHHH CS
RrnaAD 260 fkel 263
f+ l
tr|K7E385|K7E385_MONDO 262 FEVL 265
7765 PP
>> tr|F7FVV1|F7FVV1_MONDO Ribosomal RNA adenine dimethylase domain containing 1 OS=Monodelphis domestica OX=13616 GN=RR
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.5 0.0 8.2e-09 2.9e-05 26 82 .. 149 204 .. 107 217 .. 0.88
Alignments for each domain:
== domain 1 score: 23.5 bits; conditional E-value: 8.2e-09
H-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTTTCCCEEEE- CS
RrnaAD 26 lnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkklskdeklkvvh 82
++l+ +v+++g+G+G+lT+ La + +v+ +E+d++L+++ q+ ++e l +++
tr|F7FVV1|F7FVV1_MONDO 149 SDLTSCNQVVDVGSGQGHLTRFLALGLgLSVTGIEKDRKLVERAQH--LDQELLSILK 204
4788899****************88888****************99..5566666655 PP
>> tr|F6WM17|F6WM17_MONDO Protein arginine methyltransferase 9 OS=Monodelphis domestica OX=13616 GN=PRMT9 PE=3 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.5 0.0 1.9e-05 0.068 18 94 .. 160 240 .. 152 265 .. 0.83
Alignments for each domain:
== domain 1 score: 12.5 bits; conditional E-value: 1.9e-05
HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHH CS
RrnaAD 18 vineIldklnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpeev 94
++n++++k+ +tvl+ig+G+Gil+ +ak a v + El + +++l + + ++ +k++h l+ ++p+ +
tr|F6WM17|F6WM17_MONDO 160 TYNSAIQKVVRLGCKTVLDIGAGTGILSM-FAKNAgaHRVYACELSKTMYELACDVVAankMETGIKLLHMKSLDIDVPKHI 240
677777777777889************97.55555579999**********9999777777788899999999999999865 PP
>> tr|F6XFW3|F6XFW3_MONDO Methyltransferase like 22 OS=Monodelphis domestica OX=13616 GN=METTL22 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.0 3.4e-05 0.12 19 76 .. 194 251 .. 191 339 .. 0.78
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 3.4e-05
HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCC CS
RrnaAD 19 ineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskde 76
++ Il + +l ++ tvle+g+G+Gi + + a ak v e+L+ + + ++ +++
tr|F6XFW3|F6XFW3_MONDO 194 ADYILFQRDLFKSCTVLELGAGTGIASIITATVAKTVYCTDVGEDLLTMCERNVALNK 251
67799999999*************9988888888877766666666665555544443 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 21272 (11266248 residues searched)
Passed MSV filter: 919 (0.0432023); expected 425.4 (0.02)
Passed bias filter: 469 (0.0220478); expected 425.4 (0.02)
Passed Vit filter: 55 (0.00258556); expected 21.3 (0.001)
Passed Fwd filter: 6 (0.000282061); expected 0.2 (1e-05)
Initial search space (Z): 21272 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.23u 0.01s 00:00:00.24 Elapsed: 00:00:00.09
# Mc/sec: 33172.84
//
[ok]