# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/RrnaAD.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: RrnaAD [M=265]
Accession: PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.9e-65 218.3 0.0 7.1e-65 217.8 0.0 1.1 1 tr|A9V663|A9V663_MONBE rRNA adenine N(6)-methyltransferase O
1.1e-24 85.9 0.0 3e-18 64.9 0.0 2.1 2 tr|A9UY16|A9UY16_MONBE rRNA adenine N(6)-methyltransferase O
1.2e-07 30.1 0.0 2.1e-07 29.4 0.0 1.4 1 tr|A9UZ84|A9UZ84_MONBE Predicted protein OS=Monosiga brevico
1.8e-05 23.0 0.0 2.9e-05 22.3 0.0 1.2 1 tr|A9UV85|A9UV85_MONBE Predicted protein OS=Monosiga brevico
0.00084 17.5 0.1 0.0012 17.0 0.1 1.4 1 tr|A9VD27|A9VD27_MONBE Predicted protein OS=Monosiga brevico
0.0061 14.7 0.0 0.0094 14.1 0.0 1.2 1 tr|A9UQI2|A9UQI2_MONBE Uncharacterized protein OS=Monosiga b
------ inclusion threshold ------
0.015 13.4 0.0 0.025 12.7 0.0 1.3 1 tr|A9V6A5|A9V6A5_MONBE Predicted protein OS=Monosiga brevico
0.075 11.1 0.0 0.085 11.0 0.0 1.2 1 tr|A9UUG3|A9UUG3_MONBE Predicted protein (Fragment) OS=Monos
Domain annotation for each sequence (and alignments):
>> tr|A9V663|A9V663_MONBE rRNA adenine N(6)-methyltransferase OS=Monosiga brevicollis OX=81824 GN=27741 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 217.8 0.0 6.2e-68 7.1e-65 4 228 .. 37 252 .. 35 265 .. 0.96
Alignments for each domain:
== domain 1 score: 217.8 bits; conditional E-value: 6.2e-68
CXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCG CS
RrnaAD 4 lrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflk 87
++k++gq++lkn+ v+++I+dk+ ++ ++tvleigpG+G+lT++L++ k+vv+ E d+rLa++lqk++ +++kl +v D+lk
tr|A9V663|A9V663_MONBE 37 FNKDFGQHILKNPLVVQGIIDKAAIKSTDTVLEIGPGTGNLTVKLLEKGKKVVACEVDPRLAAELQKRVMgtpLHRKLHLVMGDVLK 123
799******************************************************************9999************** PP
HHHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC- CS
RrnaAD 88 fetpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakve 174
+++p + +van+Py+is+++v+++l ++r+ ++ ++l++q+efa+rl+a+pg+ +++rlsv++++++ v +v+kv+
tr|A9V663|A9V663_MONBE 124 ADLPFFD----------VCVANMPYQISSPFVFKIL-LHRPLFRCAVLMFQREFAQRLVAKPGDALYCRLSVNTQLLARVDHVMKVG 199
*****77..........7******************.899999******************************************** PP
GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCT CS
RrnaAD 175 ksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksl 228
+++f+Pppkv+s++v++e+++++ p +d ++++ ++r++++rk+ktl + ++s+
tr|A9V663|A9V663_MONBE 200 RNNFRPPPKVESSVVRIEPRNPP-PPVDFEEWDGLLRIAFIRKNKTLAACFHSK 252
**********************9.8**********************9987765 PP
>> tr|A9UY16|A9UY16_MONBE rRNA adenine N(6)-methyltransferase OS=Monosiga brevicollis OX=81824 GN=24887 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 19.4 0.0 2e-07 0.00023 3 53 .. 21 71 .. 19 78 .. 0.93
2 ! 64.9 0.0 2.6e-21 3e-18 131 230 .. 81 179 .. 73 190 .. 0.94
Alignments for each domain:
== domain 1 score: 19.4 bits; conditional E-value: 2e-07
CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-S CS
RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrak 53
+++k+++qnf+ + +++ ++++ + v+eig G+G lT+ +++ a+
tr|A9UY16|A9UY16_MONBE 21 RAKKKLSQNFILHQPCADKFVRAAGDLRDRVVVEIGGGPGSLTRAILEAAR 71
689**********************99*******************99985 PP
== domain 2 score: 64.9 bits; conditional E-value: 2.6e-21
EEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTT CS
RrnaAD 131 vkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrk 217
m+l++q+e +rl+a+p+s r ++s +++ +++v + + +++++f P+p+vd +v le+k+e+ p +d +++e v+r+l++
tr|A9UY16|A9UY16_MONBE 81 LAMTLIFQREYGERLFAPPNSLHRAKISAFVQQYCNVSPGYLLPRNVFVPEPRVDTMVVHLESKPEP-PAVDPAVFEDVLRHLFTTP 166
579***************************************************************9.8****************** PP
TSBCCCHCCCTST CS
RrnaAD 218 rktlstslksllp 230
r+ l++ ++ ll
tr|A9UY16|A9UY16_MONBE 167 RRLLRNGMQPLLG 179
*******998776 PP
>> tr|A9UZ84|A9UZ84_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=25375 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.4 0.0 1.8e-10 2.1e-07 5 230 .. 1584 1843 .. 1580 1874 .. 0.75
Alignments for each domain:
== domain 1 score: 29.4 bits; conditional E-value: 1.8e-10
XXGCG--.EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-........SEEEEE-S-HHHHHHHHCHTTTCCCEEE CS
RrnaAD 5 rksygqn.flknkkvineIldklnleekltvleigpGkGilTeeLakra........kqvvvlElderLakllqkklskdeklkv 80
r+s +q f+ ++ +++ I + ++ e v+e ++G G+lT+ +++ + + l +d++ +++l++++ + l v
tr|A9UZ84|A9UZ84_MONBE 1584 RSSASQPlFVMDPRLADLIAAHCDV-EGRHVYEQAAGAGLLTQAFLQHGaafvtgcnSSSSRLNIDPDCFERLTNAFP--KHLSV 1665
55555533999*************9.6789*************9976533345666777888*************887..55666 PP
E-S-....CCGHHHHHHHCT..........TTCCCCEEEEEEE--TTTHHHHHHHHHH.........GGGGCEEEEEEEEEHHHH CS
RrnaAD 81 vhqD....flkfetpeevte..........kdsihqeflvvanlPyeistqlvkqlle.........esrfglvkmllwlqkefa 142
+++ ++ tpe v e kd + fl+ lP + + + +l ++r k + +l ++ a
tr|A9UZ84|A9UZ84_MONBE 1666 INAHlsvlGYHQTTPEAVKEhednvlaarqKDLPRTLFLF---LPTHNGLGYITNVLYqlvafdspfSYRQ-SCKFYCLLNRKWA 1746
66652222466667776666999***98766666666666...5555555555555555555699988888.5999********* PP
HHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSE.....EEEEEEE-SS-S--S-....HHHHHHHHHHHHCTTT CS
RrnaAD 143 rrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvds.....alvelerkdedlpqkd....lkkyesvvrkllnrkr 218
++l+a+pg+++ r++ l+++++dv + ++++fsPp v l+e+ +k+ ++ ++ l++y+ + kl++ +
tr|A9UZ84|A9UZ84_MONBE 1747 QTLVADPGQSRFTRITALTKTLCDVHELRVFPRQLFSPPLDVYKkddtmHLLEIAPKASLPDSVStpvgLARYDETLLKLFAPNQ 1831
***************************************6664355567899999999866444312226778888888888888 PP
SBCCCHCCCTST CS
RrnaAD 219 ktlstslksllp 230
++++ l+ +
tr|A9UZ84|A9UZ84_MONBE 1832 LPVRKLLEPYVD 1843
888887775555 PP
>> tr|A9UV85|A9UV85_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=18255 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.3 0.0 2.5e-08 2.9e-05 27 82 .. 71 130 .. 61 139 .. 0.90
Alignments for each domain:
== domain 1 score: 22.3 bits; conditional E-value: 2.5e-08
-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE- CS
RrnaAD 27 nleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvh 82
++++++ vleig+G G+l ak ++v ++E +++a+l q+ +s ++ +++v++
tr|A9UV85|A9UV85_MONBE 71 QIQPSDIVLEIGTGSGLLAMLAAKAGaRHVYAIEANRHMAQLAQHIISvngLADRITVIN 130
799***************988888778******************999889999999998 PP
>> tr|A9VD27|A9VD27_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=34649 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 0.1 1.1e-06 0.0012 25 73 .. 41 93 .. 28 144 .. 0.81
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 1.1e-06
HH-GG....TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT CS
RrnaAD 25 klnle....ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls 73
++n + ++l vle+g G G+l+ eLa r+k v + ++++ l+++
tr|A9VD27|A9VD27_MONBE 41 QINKRgldwKQLSVLEVGCGAGVLSLELAARVKDVLAADPSAAMIAKLKERQA 93
4444466689***************************9999999999999655 PP
>> tr|A9UQI2|A9UQI2_MONBE Uncharacterized protein OS=Monosiga brevicollis OX=81824 GN=21077 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.1 0.0 8.2e-06 0.0094 30 76 .. 60 108 .. 37 113 .. 0.84
Alignments for each domain:
== domain 1 score: 14.1 bits; conditional E-value: 8.2e-06
TTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTTTCC CS
RrnaAD 30 ekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkklskde 76
e + l++g+G G Te+L+ a k v +l +d+r++ +++ls+ +
tr|A9UQI2|A9UQI2_MONBE 60 ERTRALDVGAGIGRITEHLLIPAgfKAVDLLDIDQRFLDTARDRLSSTG 108
77888**************888788*****************9998655 PP
>> tr|A9V6A5|A9V6A5_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=10470 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.7 0.0 2.2e-05 0.025 31 75 .. 242 286 .. 230 309 .. 0.89
Alignments for each domain:
== domain 1 score: 12.7 bits; conditional E-value: 2.2e-05
TSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTC CS
RrnaAD 31 kltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskd 75
+l++le+++G G T + + +v ++E+ + L++ + +l+++
tr|A9V6A5|A9V6A5_MONBE 242 DLNLLELYSGSGTYTPAMCSVFAHVLSVEIQRTLVEAARRNLELN 286
6799*********************************99998843 PP
>> tr|A9UUG3|A9UUG3_MONBE Predicted protein (Fragment) OS=Monosiga brevicollis OX=81824 GN=15704 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.0 0.0 7.4e-05 0.085 35 86 .. 2 55 .. 1 97 [. 0.81
Alignments for each domain:
== domain 1 score: 11.0 bits; conditional E-value: 7.4e-05
EEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CC CS
RrnaAD 35 leigpGkGilTeeLakrakqvvvlElderLakllqkkls..kdeklkvvhqDfl 86
l+ig+G G Te+L ++qv E +++ +l+ + + ++ D l
tr|A9UUG3|A9UUG3_MONBE 2 LDIGAGDGGVTEQLRPLFDQVETTETNRVMRWRLSRRGYlrVHDEASWMAGDQL 55
9***************************99988887533347777777776655 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 227 (0.0247061); expected 183.8 (0.02)
Passed bias filter: 196 (0.0213322); expected 183.8 (0.02)
Passed Vit filter: 34 (0.00370048); expected 9.2 (0.001)
Passed Fwd filter: 8 (0.000870701); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 8 [number of targets reported over threshold]
# CPU time: 0.13u 0.01s 00:00:00.14 Elapsed: 00:00:00.05
# Mc/sec: 29213.40
//
[ok]