# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/RrnaAD.hmm.txt
# target sequence database: proteomes/Natronomonas_moolapensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: RrnaAD [M=265]
Accession: PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-45 152.4 0.0 2.2e-45 152.2 0.0 1.1 1 tr|M1XRN3|M1XRN3_NATM8 Probable ribosomal RNA small subunit
0.00019 17.9 0.0 0.00027 17.4 0.0 1.2 1 tr|M1XNA3|M1XNA3_NATM8 Probable demethylmenaquinone methyltr
0.00067 16.1 0.0 0.00079 15.9 0.0 1.1 1 tr|M1Y4D2|M1Y4D2_NATM8 Probable S-adenosylmethionine-depende
0.0032 13.9 0.0 0.0046 13.4 0.0 1.1 1 tr|M1XTN7|M1XTN7_NATM8 Probable S-adenosylmethionine-depende
0.0042 13.5 0.0 0.0057 13.1 0.0 1.1 1 tr|M1XTL7|M1XTL7_NATM8 tRNA (Adenine-N(1))-methyltransferase
------ inclusion threshold ------
0.03 10.7 0.0 0.042 10.2 0.0 1.2 1 tr|M1XZU1|M1XZU1_NATM8 Protein-L-isoaspartate O-methyltransf
Domain annotation for each sequence (and alignments):
>> tr|M1XRN3|M1XRN3_NATM8 Probable ribosomal RNA small subunit methyltransferase A OS=Natronomonas moolapensis (strain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 152.2 0.0 4.7e-48 2.2e-45 9 230 .. 20 231 .. 13 267 .. 0.93
Alignments for each domain:
== domain 1 score: 152.2 bits; conditional E-value: 4.7e-48
G--EE--HHHHHHHHHHH-GG.TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHH CS
RrnaAD 9 gqnflknkkvineIldklnle.ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflkfetp 91
q+fl++ v+++ l ++ v+eig G+G lT +L+ a+ v+v+E d++La++l++++ ++ l+vv D+l+ ++p
tr|M1XRN3|M1XRN3_NATM8 20 DQHFLVDDRVLDRLPGYLPDGaDTSHVVEIGGGTGGLTDRLLSVADRVTVVERDPDLAAFLREEFAaeiAGGTLTVVAGDALEVDLP 106
58999999999987666533359999***************************************99999***************** PP
HHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCE CS
RrnaAD 92 eevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksif 178
+ + v+nlPy++s+++ ++ll ++r+ +l++q efa+r++a+pgs++++rlsv + ++d+++v++v+k++f
tr|M1XRN3|M1XRN3_NATM8 107 AFT----------ASVSNLPYGVSSEIAFRLLPAGRP----LVLMFQAEFAERMAAAPGSSEYGRLSVTAGHYADIEVVEAVPKEAF 179
*55..........89*****************98888....9********************************************* PP
CS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTST CS
RrnaAD 179 sPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllp 230
sPpp v+s++v+ +++ ++ ++ d + + ++vr++++++rkt+++++ ++++
tr|M1XRN3|M1XRN3_NATM8 180 SPPPAVESSVVRATPRVPEYDVPDDESFMALVRAVFTQRRKTMRNAIRNTTH 231
******************99****************************9987 PP
>> tr|M1XNA3|M1XNA3_NATM8 Probable demethylmenaquinone methyltransferase OS=Natronomonas moolapensis (strain DSM 18674
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.4 0.0 5.9e-07 0.00027 12 55 .. 27 70 .. 22 100 .. 0.91
Alignments for each domain:
== domain 1 score: 17.4 bits; conditional E-value: 5.9e-07
EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEE CS
RrnaAD 12 flknkkvineIldklnleekltvleigpGkGilTeeLakrakqv 55
f++n+ + +e+l+ +e + vl++g G+G+ Te L++ + v
tr|M1XNA3|M1XNA3_NATM8 27 FIWNEEMRDEALEWFGIEAGDRVLDVGCGTGFATEGLLEHTDDV 70
9************************************9988766 PP
>> tr|M1Y4D2|M1Y4D2_NATM8 Probable S-adenosylmethionine-dependent methyltransferase OS=Natronomonas moolapensis (strain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 15.9 0.0 1.7e-06 0.00079 20 93 .. 34 110 .. 18 154 .. 0.87
Alignments for each domain:
== domain 1 score: 15.9 bits; conditional E-value: 1.7e-06
HHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHH CS
RrnaAD 20 neIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpee 93
+ +ld+l + e++ +le++ G+G +T+ La+r v + + e++++ + k + de l ++ D+ +p +
tr|M1Y4D2|M1Y4D2_NATM8 34 EAVLDALGPIEDKRILEVACGTGRFTVMLADRGADIVGMDISEAMLEQGRRKARsagVDESLSFIQGDAGRLPFPDD 110
5678899999**************************************99999888999999999999887777765 PP
>> tr|M1XTN7|M1XTN7_NATM8 Probable S-adenosylmethionine-dependent methyltransferase OS=Natronomonas moolapensis (strain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.4 0.0 1e-05 0.0046 21 69 .. 22 71 .. 20 79 .. 0.90
Alignments for each domain:
== domain 1 score: 13.4 bits; conditional E-value: 1e-05
HHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHH CS
RrnaAD 21 eIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllq 69
e+l l + + v+++g G+G+lT+ L + + +vv d rL+++l+
tr|M1XTN7|M1XTN7_NATM8 22 EALADLSIDDCERVVDVGCGEGALTRVLREECpGEVVGCDRDARLLAELE 71
5677788889999*******************9************99886 PP
>> tr|M1XTL7|M1XTL7_NATM8 tRNA (Adenine-N(1))-methyltransferase TrmI OS=Natronomonas moolapensis (strain DSM 18674 / JC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.1 0.0 1.3e-05 0.0057 31 79 .. 83 134 .. 71 142 .. 0.82
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 1.3e-05
TSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEE CS
RrnaAD 31 kltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklk 79
+ l+ g+G+G+l + L +v+ +E d ++a++ ++++ +e++
tr|M1XTL7|M1XTL7_NATM8 83 GDRALDAGTGTGVLAAYLGRLGVEVTTYERDAEFAAVARENMAtagVAEQID 134
67789**********************************9877555555555 PP
>> tr|M1XZU1|M1XZU1_NATM8 Protein-L-isoaspartate O-methyltransferase OS=Natronomonas moolapensis (strain DSM 18674 / JC
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 0.0 9.3e-05 0.042 19 65 .. 65 113 .. 59 130 .. 0.77
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 9.3e-05
HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHH CS
RrnaAD 19 ineIldklnleekltvleigpGkGilTeeLakra..kqvvvlElderLa 65
+ + +++l++++++tvl +g G+G + + La+ +v + + +rL+
tr|M1XZU1|M1XZU1_NATM8 65 AGRLFEALDIRPDDTVLVVGVGVGYTAAVLAELTdeASVHGIDIARRLV 113
5678999*************************99444444455556665 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 2723 (809592 residues searched)
Passed MSV filter: 57 (0.0209328); expected 54.5 (0.02)
Passed bias filter: 55 (0.0201983); expected 54.5 (0.02)
Passed Vit filter: 23 (0.00844657); expected 2.7 (0.001)
Passed Fwd filter: 6 (0.00220345); expected 0.0 (1e-05)
Initial search space (Z): 2723 [actual number of targets]
Domain search space (domZ): 6 [number of targets reported over threshold]
# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01
# Mc/sec: 21454.19
//
[ok]