# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/RrnaAD.hmm.txt
# target sequence database: proteomes/Nematostella_vectensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: RrnaAD [M=265]
Accession: PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.8e-65 219.0 0.0 9.4e-65 218.7 0.0 1.1 1 tr|A7RW11|A7RW11_NEMVE rRNA adenine N(6)-methyltransferase O
4.2e-40 137.9 0.0 5e-40 137.7 0.0 1.1 1 tr|A7SV30|A7SV30_NEMVE rRNA adenine N(6)-methyltransferase O
8.4e-20 71.4 0.0 1.5e-19 70.5 0.0 1.4 1 tr|A7SNR6|A7SNR6_NEMVE rRNA adenine N(6)-methyltransferase O
3.2e-09 36.7 0.0 3.6e-09 36.5 0.0 1.2 1 tr|A7T8F0|A7T8F0_NEMVE rRNA adenine N(6)-methyltransferase (
0.00013 21.6 0.0 0.00025 20.6 0.0 1.3 1 tr|A7SJF3|A7SJF3_NEMVE Predicted protein OS=Nematostella vec
0.00018 21.1 0.0 0.00039 20.0 0.0 1.5 1 tr|A8DVM8|A8DVM8_NEMVE Predicted protein (Fragment) OS=Nemat
0.0023 17.5 0.2 0.006 16.1 0.1 1.6 2 tr|A7SXL3|A7SXL3_NEMVE Protein-L-isoaspartate O-methyltransf
0.0072 15.9 0.0 0.015 14.8 0.0 1.6 1 tr|A7RKE5|A7RKE5_NEMVE Predicted protein OS=Nematostella vec
------ inclusion threshold ------
0.026 14.1 0.0 0.032 13.7 0.0 1.1 1 tr|A7SLP3|A7SLP3_NEMVE Predicted protein OS=Nematostella vec
0.026 14.0 0.0 0.05 13.1 0.0 1.3 1 tr|A7SBZ7|A7SBZ7_NEMVE Predicted protein OS=Nematostella vec
0.035 13.6 0.1 0.12 11.9 0.0 1.8 2 tr|A8DW28|A8DW28_NEMVE Predicted protein OS=Nematostella vec
0.085 12.4 0.0 0.13 11.7 0.0 1.4 1 tr|A7SHL2|A7SHL2_NEMVE Predicted protein OS=Nematostella vec
0.13 11.7 0.0 0.32 10.5 0.0 1.7 2 tr|A7T9Z7|A7T9Z7_NEMVE Predicted protein OS=Nematostella vec
0.14 11.7 0.0 0.32 10.5 0.0 1.7 2 tr|A7SZN3|A7SZN3_NEMVE Predicted protein OS=Nematostella vec
Domain annotation for each sequence (and alignments):
>> tr|A7RW11|A7RW11_NEMVE rRNA adenine N(6)-methyltransferase OS=Nematostella vectensis OX=45351 GN=v1g241083 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 218.7 0.0 5.4e-68 9.4e-65 3 236 .. 24 248 .. 22 278 .. 0.94
Alignments for each domain:
== domain 1 score: 218.7 bits; conditional E-value: 5.4e-68
CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CC CS
RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDfl 86
+++++ gq++lkn+ vi + +dk+ l+ ++tvleigpG+G+lT++L++++k+v + Eld+r++++lqk+++ +++kl v+ D+l
tr|A7RW11|A7RW11_NEMVE 24 RFQTEHGQHILKNPLVITSLVDKAGLRSTDTVLEIGPGTGNLTVKLLEQSKKVIACELDPRMVAELQKRVQgtpLQSKLSVMVGDVL 110
688999******************************************************************999************ PP
GHHHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC CS
RrnaAD 87 kfetpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakv 173
k+++p + +vanlPy+is+++v++ll ++r+ ++ ++l++q+efa+rl+a+pg+k+++rls+++++++ v +++kv
tr|A7RW11|A7RW11_NEMVE 111 KTDLPFFD----------VCVANLPYQISSPFVFKLL-LHRPFFRCAVLMFQREFAQRLIAKPGDKLYCRLSINTQLLARVDHIMKV 186
******77..........7******************.788889******************************************* PP
-GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHH CS
RrnaAD 174 eksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqa 236
+k++f+Pppkv+s++v++e+k+++ p ++ k+++ +vr++++rk+ktls+ ++s + l++
tr|A7RW11|A7RW11_NEMVE 187 GKNNFRPPPKVESSVVRIEPKNPP-PPVNFKEWDGLVRIAFVRKNKTLSACFNSRPVLEVLEK 248
***********************9.899*********************99887655555555 PP
>> tr|A7SV30|A7SV30_NEMVE rRNA adenine N(6)-methyltransferase OS=Nematostella vectensis OX=45351 GN=v1g174677 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 137.7 0.0 2.9e-43 5e-40 3 235 .. 21 267 .. 19 299 .. 0.88
Alignments for each domain:
== domain 1 score: 137.7 bits; conditional E-value: 2.9e-43
CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CC CS
RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls..kdeklkvvhqDfl 86
+++k+++qnf+ + ++ ++I + +++ + v e+g+G+G lT+++++ ++v ++E+d+r++ +lq l+ ++++++ h+D++
tr|A7SV30|A7SV30_NEMVE 21 TAQKQFSQNFILDLNITDKIAKVSDVF-DCYVCEVGAGPGSLTRSILNAGaRHVAAVEIDRRFLPSLQL-LEdaAKGRMTLHHADIM 105
6789*********************97.678**************977655*****************9.6668999********** PP
GHHHHHHHCT......TTCCCCEEEEEEE--TTTHHHHHHHHHH.......GGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHH CS
RrnaAD 87 kfetpeevte......kdsihqeflvvanlPyeistqlvkqlle.......esrfglvkmllwlqkefarrllarpgskkrsrlsvl 160
kf++p+ + + ++v+nlP ++s +l q+le fg+ m l++qke+a+ ++a+ gs +rsrl v+
tr|A7SV30|A7SV30_NEMVE 106 KFNIPSAFPRasptgwESGDIPGVRMVGNLPFGVSIPLLLQWLEaipersgPFAFGRTPMALVFQKEVAENIVASEGSYNRSRLAVM 192
******777799999877778889***********************9988788999****************************** PP
HHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHH CS
RrnaAD 161 reaftdvklvakveksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelq 235
+++++++k + +++s+f P+pkvd +lv l+++ ++l ++ + e+vv+++++ +rk + t lk ++pg+e
tr|A7SV30|A7SV30_NEMVE 193 VQYLCEAKRRYSLPSSVFVPKPKVDASLVVLTPRVTPLIDAPFIVVEQVVKAVFAMRRKFIHTPLKLMFPGKEEL 267
************************************9967777788********************999998843 PP
>> tr|A7SNR6|A7SNR6_NEMVE rRNA adenine N(6)-methyltransferase OS=Nematostella vectensis OX=45351 GN=v1g246432 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 70.5 0.0 8.9e-23 1.5e-19 11 234 .. 55 322 .. 47 349 .. 0.84
Alignments for each domain:
== domain 1 score: 70.5 bits; conditional E-value: 8.9e-23
-EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGHHHHHHHC CS
RrnaAD 11 nflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls.kdeklkvvhqDflkfetpeevt 95
++++++ +++++ + ln++ v+e pG+G+lT+ + + kqv lE d+ +++ l+ s ++k + + Df k +
tr|A7SNR6|A7SNR6_NEMVE 55 KYITDRDLAERVAKVLNVQ-GHCVIEASPGPGMLTRAMIDSGaKQVIGLEPDKIFMEDLRSLQSeTNGKFTPLFGDFGKIDPHLVHD 140
89****************8.5689**************88877******************65578889999*********999554 PP
T..........................TTCCCCEEEEEE...E--TTTHHHHHHHHHH.....GGGG..CEEEEEEEEEHHHHHHHH CS
RrnaAD 96 e..........................kdsihqeflvva...nlPyeistqlvkqlle.....esrf..glvkmllwlqkefarrll 146
e s++ + ++v+ + +t++ + +l es+f g+ + l+ a+rll
tr|A7SNR6|A7SNR6_NEMVE 141 EsdtkaricrapaiaskdlfkgispveWESDETPVKFVGiegGKTLASTTKILMSYLArvpgkESIFkiGRCELLFFYTHDRAERLL 227
499***********************95666666666651115667889999999999*****66652256778889999******* PP
--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSE....EEEEEEE-SS.-S..--S-HHHHHHHHHHHHCTTTSBCCCHCC CS
RrnaAD 147 arpgskkrsrlsvlreaftdvklvakveksifsPppkvds....alvelerkde.dl..pqkdlkkyesvvrkllnrkrktlstslk 226
a+pg k ++rls+++ +f+dv+++ + ++f P + d+ l+ + +k+ d+ p+ l +++r+l+++ +++l tsl+
tr|A7SNR6|A7SNR6_NEMVE 228 AQPGTKYYNRLSIMASLFCDVNVIHREPCQMFDPYFRKDGkkelQLISIVPKKRlDFsiPEDCLHLVGYFIRILMIKPKQSLATSLD 314
******************************77776665555555899998886423333888899999******************* PP
CTSTCHHH CS
RrnaAD 227 sllpggel 234
+ pg+ +
tr|A7SNR6|A7SNR6_NEMVE 315 GISPGSHV 322
99888764 PP
>> tr|A7T8F0|A7T8F0_NEMVE rRNA adenine N(6)-methyltransferase (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g15011
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 36.5 0.0 2.1e-12 3.6e-09 181 237 .. 1 56 [. 1 86 [. 0.84
Alignments for each domain:
== domain 1 score: 36.5 bits; conditional E-value: 2.1e-12
--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHC CS
RrnaAD 181 ppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqal 237
pp+v+s++v++e+k+++ p ++ k+++ +vr++++rk+ktls+ ++s + l+++
tr|A7T8F0|A7T8F0_NEMVE 1 PPNVESSVVRIEPKNPP-PPVNFKEWDGLVRIAFVRKNKTLSACFNSRPVLEMLEKN 56
69**************9.899**********************98876555555554 PP
>> tr|A7SJF3|A7SJF3_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g245654 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.6 0.0 1.5e-07 0.00025 18 92 .. 54 132 .. 48 151 .. 0.84
Alignments for each domain:
== domain 1 score: 20.6 bits; conditional E-value: 1.5e-07
HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHH CS
RrnaAD 18 vineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpe 92
++++++ l ++++ tvl+ g+G G ++La +vv+lEl e++ ++ + + ++ k+k+ D+lk e e
tr|A7SJF3|A7SJF3_NEMVE 54 AVDDAIKILRINKEHTVLDFGSGLGGPARHLAANTgCHVVALELQEDMHESAIDLTKrcgLSDKVKLQCGDILKLEHSE 132
67899999***********************66665************9986554445559999999999999998776 PP
>> tr|A8DVM8|A8DVM8_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g225754 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 20.0 0.0 2.2e-07 0.00039 30 92 .. 246 308 .. 233 316 .. 0.88
Alignments for each domain:
== domain 1 score: 20.0 bits; conditional E-value: 2.2e-07
TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHH CS
RrnaAD 30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfetpe 92
++t+leig G G++T +a+ ++qv v+El +r +++ ++ +k+ +l+++ + ++e+++
tr|A8DVM8|A8DVM8_NEMVE 246 RNKTLLEIGGGCGAFTGMFAEKLEQVKVVELSRRRSEIIYQRHNKYDNLEILVGNLNDMEIKQ 308
7899***********************************99999*******998888877766 PP
>> tr|A7SXL3|A7SXL3_NEMVE Protein-L-isoaspartate O-methyltransferase OS=Nematostella vectensis OX=45351 GN=v1g136839 PE
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.0 1.1 1.9e+03 239 259 .. 5 25 .. 2 30 .. 0.78
2 ! 16.1 0.1 3.4e-06 0.006 25 78 .. 73 128 .. 67 150 .. 0.83
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 1.1
T.T--TTTCCCCSGHHHHHHH CS
RrnaAD 239 stgindnalvkklsaeqtldi 259
s+gin+n+lv++l+ ++++
tr|A7SXL3|A7SXL3_NEMVE 5 SHGINNNDLVTQLRQFDIIKS 25
569*******99998777665 PP
== domain 2 score: 16.1 bits; conditional E-value: 3.4e-06
HH-GGTTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTTTCCCE CS
RrnaAD 25 klnleekltvleigpGkGilTeeLakra...kqvvvlElderLakllqkklskdekl 78
k n++e +vl++g+G G lT+ +a ++ +vv + ++L+ + +k++ +++
tr|A7SXL3|A7SXL3_NEMVE 73 KDNIREGAKVLDVGSGSGYLTAVMAIMVgktGKVVGIDHIQELVDMSRKNVL-KGNA 128
6699*******************999999777899999999*****999887.3333 PP
>> tr|A7RKE5|A7RKE5_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g238915 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.0 8.8e-06 0.015 30 117 .. 61 181 .. 45 198 .. 0.73
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 8.8e-06
TTSEEEEES-TTTCCHHHHHCC-...SEEEEE-S-..HHHHHHHHCHTT......TCCCEEEE-S-CCGHHHHHHHCT......... CS
RrnaAD 30 ekltvleigpGkGilTeeLakra...kqvvvlEld..erLakllqkkls......kdeklkvvhqDflkfetpeevte......... 96
+ lt+leig G+G+lT L k + ++v ++ d e++ ++ qk+++ +++kl+ + + k +p e ++
tr|A7RKE5|A7RKE5_NEMVE 61 KPLTILEIGCGTGLLTDTLTKVLkgaDNVKIMAADplESMREVFQKNFKefmnnsSSPKLEFHACVAEKLPFPDESIDlivagasyh 147
6789***************99997767777665553346666666666555567777777777777777777777777777777777 PP
.............TTCCCCEEEEEEE--TTTHHH CS
RrnaAD 97 .............kdsihqeflvvanlPyeistq 117
+ +h +++ + nlP+e s +
tr|A7RKE5|A7RKE5_NEMVE 148 wfanqeayreiarVLVPHGKIAYITNLPNEFSGP 181
7777777777776667777777777777777655 PP
>> tr|A7SLP3|A7SLP3_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g246063 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.7 0.0 1.8e-05 0.032 14 94 .. 12 99 .. 8 121 .. 0.76
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 1.8e-05
--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-....SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHH CS
RrnaAD 14 knkkvineIldklnleekltvleigpGkGilTeeLakra....kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpeev 94
+n+ + +++++l ++++ +le+g G+G+ + + r+ +v + + + + l+++++ k++kl++v++D+ + ++
tr|A7SLP3|A7SLP3_NEMVE 12 HNEILEHQAVETLGIQPNHRILEVGFGPGVGLAAALRRVkegsGKVYGVDISSIVLSLTNQAFAteiKSGKLEIVQADVINLPYGKNF 99
5777778999999999********9888774333333332334889999999999999999888999999999999999988777665 PP
>> tr|A7SBZ7|A7SBZ7_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g168810 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.1 0.0 2.8e-05 0.05 29 83 .. 160 218 .. 145 229 .. 0.78
Alignments for each domain:
== domain 1 score: 13.1 bits; conditional E-value: 2.8e-05
GTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S CS
RrnaAD 29 eekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvhq 83
+ + vl+ig+G Gil+ ++ k+v + E+ + +++l ++ l ++ ++v+h+
tr|A7SBZ7|A7SBZ7_NEMVE 160 NGCDIVLDIGSGSGILSMFAVQAGaKKVYACEMSKTMYELSKDVLLgnqMESFIEVIHK 218
55678************86654446*****************98777666777888876 PP
>> tr|A8DW28|A8DW28_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g225887 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.9 0.0 6.7e-05 0.12 23 97 .. 2 89 .. 1 137 [. 0.75
2 ? -1.4 0.0 0.74 1.3e+03 162 196 .. 212 248 .. 204 271 .. 0.64
Alignments for each domain:
== domain 1 score: 11.9 bits; conditional E-value: 6.7e-05
HHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHH.HCHTT...TCCCEEE.E-S-CCGHHHHHHHCT........T CS
RrnaAD 23 ldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakll.qkkls...kdeklkv.vhqDflkfetpeevte........k 97
++ ln++ek+ vl+ + G G + + +++ +++ + El ++L +l +k++ +e++ +++++ f++ ++ +
tr|A8DW28|A8DW28_NEMVE 2 VEMLNPNEKTRVLDXACGSGGFLVMVLEHVRKQIAKELYPDLEDVLlAEKFNtyeVNERVRQyAETNIYGFDFDPDLKKaarmnmvmA 89
6789**************************************987526677788888898774799*******998877555555550 PP
== domain 2 score: -1.4 bits; conditional E-value: 0.74
HHHEEEEEEEEC-GG..CECS--SSSEEEEEEEE-SS CS
RrnaAD 162 eaftdvklvakveks..ifsPppkvdsalvelerkde 196
+++ + k++a v+ +f P+ v +l+ l++k+
tr|A8DW28|A8DW28_NEMVE 212 WILENFKILASVDLAveAFLPQVGVQASLLFLQKKTD 248
5555666666666544467777777777777766654 PP
>> tr|A7SHL2|A7SHL2_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g245326 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.7 0.0 7.6e-05 0.13 30 56 .. 47 73 .. 33 130 .. 0.87
Alignments for each domain:
== domain 1 score: 11.7 bits; conditional E-value: 7.6e-05
TTSEEEEES-TTTCCHHHHHCC-SEEE CS
RrnaAD 30 ekltvleigpGkGilTeeLakrakqvv 56
+ +t+le+g+G+G++T+ ++k ++ +
tr|A7SHL2|A7SHL2_NEMVE 47 KPMTILELGAGTGLFTRGILKTLDDHY 73
669******************997664 PP
>> tr|A7T9Z7|A7T9Z7_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g248861 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.0 0.00018 0.32 15 80 .. 20 86 .. 8 133 .. 0.85
2 ? -1.9 0.0 1.1 1.9e+03 97 115 .. 183 201 .. 161 204 .. 0.70
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.00018
-HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEE CS
RrnaAD 15 nkkvineIldklnleekltvleigpGkGilTeeL.akrakqvvvlElderLakllqkklskdeklkv 80
kkv+n+I+ l + vl++g G+G T + a+ ++ +++ +d++ + + +k + ++++
tr|A7T9Z7|A7T9Z7_NEMVE 20 QKKVANQIFPSLPFATAKFVLDLGCGTGDVTGAMaANFSNDASIIGIDPDKYRVELAKSNHCSNVQF 86
689******************************9555559999999988766666665556666665 PP
== domain 2 score: -1.9 bits; conditional E-value: 1.1
TTCCCCEEEEEEE--TTTH CS
RrnaAD 97 kdsihqeflvvanlPyeis 115
k + f++++n+P i+
tr|A7T9Z7|A7T9Z7_NEMVE 183 KECSGAGFKIISNTPSTIT 201
6666778999999999887 PP
>> tr|A7SZN3|A7SZN3_NEMVE Predicted protein OS=Nematostella vectensis OX=45351 GN=v1g248239 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.5 0.0 0.00018 0.32 15 80 .. 20 86 .. 8 132 .. 0.85
2 ? -2.0 0.0 1.1 2e+03 97 115 .. 183 201 .. 159 204 .. 0.71
Alignments for each domain:
== domain 1 score: 10.5 bits; conditional E-value: 0.00018
-HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEE CS
RrnaAD 15 nkkvineIldklnleekltvleigpGkGilTeeL.akrakqvvvlElderLakllqkklskdeklkv 80
kkv+n+I+ l + vl++g G+G T + a+ ++ +++ +d++ + + +k + ++++
tr|A7SZN3|A7SZN3_NEMVE 20 QKKVANQIFPSLPFATAKFVLDLGCGTGDVTGAMaANFSNDASIIGIDPDKYRVELAKSNHCSNVQF 86
689******************************9555559999999988766666665556666665 PP
== domain 2 score: -2.0 bits; conditional E-value: 1.1
TTCCCCEEEEEEE--TTTH CS
RrnaAD 97 kdsihqeflvvanlPyeis 115
k + f++++n+P i+
tr|A7SZN3|A7SZN3_NEMVE 183 KECSGAGFKIISNTPSTIT 201
6666778999999999887 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 24428 (8257945 residues searched)
Passed MSV filter: 642 (0.0262813); expected 488.6 (0.02)
Passed bias filter: 436 (0.0178484); expected 488.6 (0.02)
Passed Vit filter: 64 (0.00261994); expected 24.4 (0.001)
Passed Fwd filter: 14 (0.000573113); expected 0.2 (1e-05)
Initial search space (Z): 24428 [actual number of targets]
Domain search space (domZ): 14 [number of targets reported over threshold]
# CPU time: 0.20u 0.01s 00:00:00.21 Elapsed: 00:00:00.07
# Mc/sec: 31262.22
//
[ok]