# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/RrnaAD.hmm.txt
# target sequence database:        proteomes/Strongylocentrotus_purpuratus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       RrnaAD  [M=265]
Accession:   PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    3.9e-66  223.5   0.0    5.3e-66  223.1   0.0    1.1  1  tr|W4YG90|W4YG90_STRPU  rRNA adenine N(6)-methyltransferase O
    5.9e-39  134.4   0.0    7.3e-39  134.1   0.0    1.0  1  tr|W4ZKF6|W4ZKF6_STRPU  rRNA adenine N(6)-methyltransferase O
    4.6e-12   46.2   0.0    7.1e-12   45.6   0.0    1.3  1  tr|W4XYE4|W4XYE4_STRPU  rRNA adenine N(6)-methyltransferase O
    1.4e-06   28.3   0.0    2.2e-06   27.6   0.0    1.2  1  tr|W4ZKF7|W4ZKF7_STRPU  rRNA adenine N(6)-methyltransferase O
    5.5e-06   26.3   0.0      8e-06   25.8   0.0    1.2  1  tr|W4ZJS9|W4ZJS9_STRPU  Uncharacterized protein OS=Strongyloc
     0.0022   17.8   0.0        1.8    8.2   0.0    2.5  2  tr|W4Y7A2|W4Y7A2_STRPU  Uncharacterized protein OS=Strongyloc
  ------ inclusion threshold ------
      0.043   13.5   0.0       0.13   12.0   0.0    1.6  1  tr|W4YIM5|W4YIM5_STRPU  Uncharacterized protein OS=Strongyloc
       0.11   12.3   0.0       0.14   11.9   0.0    1.2  1  tr|W4YG35|W4YG35_STRPU  Uncharacterized protein OS=Strongyloc
       0.12   12.1   0.0       0.18   11.5   0.0    1.2  1  tr|W4ZK94|W4ZK94_STRPU  Uncharacterized protein OS=Strongyloc
       0.14   11.9   0.0       0.25   11.1   0.0    1.3  1  tr|W4YBQ4|W4YBQ4_STRPU  Uncharacterized protein OS=Strongyloc
       0.17   11.6   0.0       0.28   10.9   0.0    1.2  1  tr|W4ZBP9|W4ZBP9_STRPU  Uncharacterized protein OS=Strongyloc
       0.21   11.3   0.0       0.33   10.7   0.0    1.2  1  tr|W4ZE82|W4ZE82_STRPU  Uncharacterized protein OS=Strongyloc


Domain annotation for each sequence (and alignments):
>> tr|W4YG90|W4YG90_STRPU  rRNA adenine N(6)-methyltransferase OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.1   0.0   2.2e-69   5.3e-66       4     239 ..      17     243 ..      15     269 .. 0.94

  Alignments for each domain:
  == domain 1  score: 223.1 bits;  conditional E-value: 2.2e-69
                             CXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCG CS
                  RrnaAD   4 lrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls...kdeklkvvhqDflk 87 
                             +++  gq++lkn+ vi++I++k+ l+ ++tvle+gpG+G++T+++++ ak+vv+ Eld+rL+++lqk+++    ++kl+v+  D+lk
  tr|W4YG90|W4YG90_STRPU  17 FNTGIGQHILKNPLVIESIISKAALRSTDTVLEVGPGTGNMTVKMLDKAKKVVACELDPRLVAELQKRVQgtpFAPKLQVIVGDVLK 103
                             68889*****************************************************************99889************ PP

                             HHHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC- CS
                  RrnaAD  88 fetpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakve 174
                             +++p +            +vanlPy+is+++v++ll ++r+ ++ ++l++q+efa+rl+a+pg+k+++rls+++++++ v +++kv+
  tr|W4YG90|W4YG90_STRPU 104 TDLPFFD----------VCVANLPYQISSPFVFKLL-LHRPFFRCAVLMFQQEFAQRLVAKPGDKLYCRLSINTQLLARVDHLMKVG 179
                             *****77..........7******************.788889******************************************** PP

                             GGCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT CS
                  RrnaAD 175 ksifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqalss 239
                             k++f+Pppkv+s++v++e+++++ p  + ++++ +vr++++rk+ktls+++ +++  + l++++ 
  tr|W4YG90|W4YG90_STRPU 180 KNNFKPPPKVESSVVRIEPRNPP-PPINFQEWDGLVRIAFVRKNKTLSAAFRNKGVVEMLEKNYR 243
                             **********************8.89***************************999999888765 PP

>> tr|W4ZKF6|W4ZKF6_STRPU  rRNA adenine N(6)-methyltransferase OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0   3.1e-42   7.3e-39       4     259 ..      23     290 ..      20     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 3.1e-42
                             CXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT.TCCCEEEE-S-CCGH CS
                  RrnaAD   4 lrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls.kdeklkvvhqDflkf 88 
                             + k + qnfl + k+ ++I++++   +   v e+gpG+G  T+++ +r  + + v+E+d+r++ +l+   +  ++++ v   D+l  
  tr|W4ZKF6|W4ZKF6_STRPU  23 AEKHLAQNFLLDLKLTDKIVRQAGNLQGAHVCEVGPGPGGITRSIINRGvQDLLVIEKDTRFIPSLEMLTEaTEGRVRVACDDILRV 109
                             678899***************************************99988*****************977799*************9 PP

                             HHHHHHCT.....TTCCCCEEEEEEE--TTTHHHHHHHHHH.......GGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHH CS
                  RrnaAD  89 etpeevte.....kdsihqeflvvanlPyeistqlvkqlle.......esrfglvkmllwlqkefarrllarpgskkrsrlsvlrea 163
                             ++     +        +  ++ +v+nlP ++s +l+ ++le          fg+ +mll +qke+a+rl+a+pg+ +rsrls++++ 
  tr|W4ZKF6|W4ZKF6_STRPU 110 NLADAFPHhikkdWKDDPPNLHIVGNLPFNVSLPLMLRWLEsvadrtgPFSFGRTRMLLTFQKEVAERLTAPPGDDQRSRLSIMAQH 196
                             98775555666453334457************************999888899********************************** PP

                             HEEEEEEEEC-GGCECS--SSSEEEEEEEE.-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCC CS
                  RrnaAD 164 ftdvklvakveksifsPppkvdsalveler.kdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqalsstgindnalvk 249
                             +++vk+   ++  +f P+p++d  +v l++ +d+++ ++  k  e++vr ++  ++k  +   ++l+p ++ ++  + ++ d + v+
  tr|W4ZKF6|W4ZKF6_STRPU 197 LCQVKQCFVIPGAAFVPKPQIDVGVVHLTPlRDPEI-DAPFKLVEKLVRSVFHFRKKYCKRGVETLFPVERQDLT-Q-EVFDTSGVD 280
                             *****************************8566776.889999*************************9996655.4.466666666 PP

                             CSGHHHHHHH CS
                  RrnaAD 250 klsaeqtldi 259
                               ++  +l++
  tr|W4ZKF6|W4ZKF6_STRPU 281 PTQRPVWLTM 290
                             6655555555 PP

>> tr|W4XYE4|W4XYE4_STRPU  rRNA adenine N(6)-methyltransferase OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0     3e-15   7.1e-12      29     262 ..     171     434 ..     141     437 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 3e-15
                             G.TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CCGHHHHHHHCT............... CS
                  RrnaAD  29 e.ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls..kdeklkvvhqDflkfetpeevte............... 96 
                             + e+ t++    G+G++++eL++     v  l   e+++  l++ ++       ++ h+D+++++   +  +               
  tr|W4XYE4|W4XYE4_STRPU 171 KeETATIITANEGPGFMSRELLDNGaARVLGLCRHEQFCGTLEN-IRmeTPDCFQWQHADIYQMQYIGDR-Dirppvariedvfqdi 255
                             358899999************7665599999999******9998.443366779***********99843.4689************ PP

                             ...TTCCCCEEEEEEE--TTTHHH....HHHHHHH...GGGGCEEEEEEEEEHHHHHHHH--TT.STT-SHHHHHHHHHEEEEEEEE CS
                  RrnaAD  97 ...kdsihqeflvvanlPyeistq....lvkqlle...esrfglvkmllwlqkefarrllarpg.skkrsrlsvlreaftdvklvak 172
                                  +    ++vv++lP     +    l + +le   +   g+v+  l + k+ +++l+ +pg +k++++ls l+++  d+kl+ +
  tr|W4XYE4|W4XYE4_STRPU 256 estAWEEDIGLKVVGALPQDGERKhayvLASLILErlsMFSYGRVQLNLFMSKNCYNTLIHPPGnMKSYRALSALYQVSSDIKLLHN 342
                             9988899999********75433211113333444554888899*******************7469*******************9 PP

                             C-GGCECS--SSSEEEEEEEE-SS-S--S-HHHHH.....HHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCCSGHH CS
                  RrnaAD 173 veksifsPppkvdsalvelerkdedlpqkdlkkye.....svvrkllnrkrktlstslksllpggelqalsstgindnalvkklsae 254
                                s+  ++  +d+ lv+++++   ++  +++++e     ++vr++l+r++  l+++++   pg+  + +++ g n ++  +++s +
  tr|W4XYE4|W4XYE4_STRPU 343 AAVSV--EKQLEDLCLVQITPRRDLFSRHQMEQWEafifvFFVRQALARRKERLEKVIEAWAPGST-DVITELGYNRKTVTGDVSGD 426
                             98888..8889*************88999999999333334689***************7777666.77766699999999998888 PP

                             HHHHHHHH CS
                  RrnaAD 255 qtldifke 262
                             + l if +
  tr|W4XYE4|W4XYE4_STRPU 427 DLLAIFCR 434
                             88888765 PP

>> tr|W4ZKF7|W4ZKF7_STRPU  rRNA adenine N(6)-methyltransferase OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   9.1e-10   2.2e-06     143     186 ..      81     124 ..      77     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 9.1e-10
                             HHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSE CS
                  RrnaAD 143 rrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvds 186
                             +rl+a+pg+ +rsrls++++ +++vk+   ++  +f P+p+v +
  tr|W4ZKF7|W4ZKF7_STRPU  81 KRLTAPPGDDQRSRLSIMAQHLCQVKQCFVIPGAAFVPKPQVRL 124
                             8****************************************975 PP

>> tr|W4ZJS9|W4ZJS9_STRPU  Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.4e-09     8e-06      17      90 ..      99     171 ..      85     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.4e-09
                             HHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHH CS
                  RrnaAD  17 kvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfet 90 
                              v +++l+ ++le+++ vle+g G G l ++L  r+++v+ l +   L++l +   +++++++  ++D+ +f  
  tr|W4ZJS9|W4ZJS9_STRPU  99 GVRDKALSWIELEKDDVVLEVGCGSGRLCKILSPRVNSVTGLDISVGLIELAKR-ENPASNVQFFEEDAQTFGP 171
                             477999********************************************9988.459**********998865 PP

>> tr|W4Y7A2|W4Y7A2_STRPU  Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00075       1.8      26      71 ..     103     150 ..      80     165 .. 0.86
   2 !    6.7   0.0    0.0022       5.2      33      69 ..     274     312 ..     262     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00075
                             H-GGTTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCH CS
                  RrnaAD  26 lnleekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkk 71 
                             ++le    +l++g G G+ T++Lak +   ++v + + ++++ + +++
  tr|W4Y7A2|W4Y7A2_STRPU 103 AKLEMGIRMLDVGCGAGLATQILAKKFpeSHFVGVDIAQSMVDEANAE 150
                             556677789******************977888899999998887774 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0022
                             EEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHH CS
                  RrnaAD  33 tvleigpGkGilTeeLakra..kqvvvlElderLakllq 69 
                              vl++g G G+ T++Lak +   ++v + + ++++ + +
  tr|W4Y7A2|W4Y7A2_STRPU 274 RVLDVGCGAGLATQILAKKFpeSHFVGVDIAQSIVDEAN 312
                             69*****************99666676777666666655 PP

>> tr|W4YIM5|W4YIM5_STRPU  Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-05      0.13      30      90 ..     143     207 ..     127     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
                             TTSEEEEES-TTTCCHHHHHCC-..SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHH CS
                  RrnaAD  30 ekltvleigpGkGilTeeLakra..kqvvvlElderLakllqkkls...kdeklkvvhqDflkfet 90 
                             + + vl++g G+Gil+   +k+   k v ++E  +++a+  +k ++   +++k++++h  +  + +
  tr|W4YIM5|W4YIM5_STRPU 143 KGKVVLDVGCGTGILSMMCVKYGgaKRVHSIEA-SEMAETAEKLINhnnLSNKITLYHGKVEGTTL 207
                             6789******************988*******8.56888777776666688999999976655555 PP

>> tr|W4YG35|W4YG35_STRPU  Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.9e-05      0.14      15     110 ..      46     146 ..      44     206 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.9e-05
                             -HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-......SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHC CS
                  RrnaAD  15 nkkvineIldklnleekltvleigpGkGilTeeLakra......kqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevt 95 
                             + +vi+eI +k   + + +v+ +g+G G +  ++   +        ++v+E  +++ ++ +k + ++  l+ ++ D  ++ + e   
  tr|W4YG35|W4YG35_STRPU  46 DDSVIDEIAQKFSSSLEVNVMGVGTGDGSMDSIIIGKFrqkfgkLRYTVIEPGSVIEQFKNK-VHSNDELNDIEFDWKDTTFSEVCR 131
                             789**************************999986666343444469****99887776666.999******************999 PP

                             TTTCCCCEEEEEEE- CS
                  RrnaAD  96 ekdsihqeflvvanl 110
                             +  s +++f +++++
  tr|W4YG35|W4YG35_STRPU 132 DATSLKNKFVFISAI 146
                             9***********998 PP

>> tr|W4ZK94|W4ZK94_STRPU  Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.8e-05      0.18      18      53 ..      26      65 ..      22      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.8e-05
                            HHHHHHHHH-GG....TTSEEEEES-TTTCCHHHHHCC-S CS
                  RrnaAD 18 vineIldklnle....ekltvleigpGkGilTeeLakrak 53
                            v + I+ kl+l+     +  v++ig G G +T++La  ++
  tr|W4ZK94|W4ZK94_STRPU 26 VTDAIIGKLKLQksddHESLVVDIGCGSGQFTQSLARHFD 65
                            7899********88877778***************98774 PP

>> tr|W4YBQ4|W4YBQ4_STRPU  Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.25      18      69 ..     504     555 ..     493     567 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                             HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHH CS
                  RrnaAD  18 vineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllq 69 
                             ++  I d +++++ +t+l+i  G+G    +Lakr+++v  +E+ e+ ++  +
  tr|W4YBQ4|W4YBQ4_STRPU 504 LYTTIGDWAQVTKITTLLDICCGTGTIGISLAKRVEKVIGVEMNEQAIEDAK 555
                             6778889999*********************************988766655 PP

>> tr|W4ZBP9|W4ZBP9_STRPU  Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.28      29      93 ..      76     153 ..      58     172 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                             G..........TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHH CS
                  RrnaAD  29 e..........ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpee 93 
                             +          +++ vl++g+G Gil+   ++   ++v ++E  +++a+  ++ ++   +++++ v+   + + ++pe+
  tr|W4ZBP9|W4ZBP9_STRPU  76 QkamltnhedfKDKVVLDVGAGSGILSFFAVQAGaRKVYAIEA-SSIAEQAKQLVKannLGNRISVIAGKVEEVSIPEQ 153
                             33333355566999*************86544435*******8.55666666666666689999999888888877775 PP

>> tr|W4ZE82|W4ZE82_STRPU  Uncharacterized protein OS=Strongylocentrotus purpuratus OX=7668 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.33      29     112 ..     468     560 ..     448     605 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
                             G............TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCCCCE CS
                  RrnaAD  29 e............ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevtekdsihqe 103
                             +            +    l++g G G lT eL   ++qv  lE  e+++k+ ++ ls+++k+    +D      +  +  k s h+ 
  tr|W4ZE82|W4ZE82_STRPU 468 RkvcmgvaerhgtKVSRALDVGCGCGRLTFELSREVEQVIGLEYCEVFLKSAEEILSNKQKVFYCPKDDCRRPAKR-L--KKSTHNG 551
                             2555555555554556679***********************************9999999877666654444333.2..4566666 PP

                             EEEEEE--T CS
                  RrnaAD 104 flvvanlPy 112
                               + a lP 
  tr|W4ZE82|W4ZE82_STRPU 552 CTITAKLPS 560
                             666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (265 nodes)
Target sequences:                        28594  (14266044 residues searched)
Passed MSV filter:                       796  (0.027838); expected 571.9 (0.02)
Passed bias filter:                      541  (0.0189201); expected 571.9 (0.02)
Passed Vit filter:                        66  (0.00230818); expected 28.6 (0.001)
Passed Fwd filter:                        12  (0.000419668); expected 0.3 (1e-05)
Initial search space (Z):              28594  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.29u 0.01s 00:00:00.30 Elapsed: 00:00:00.10
# Mc/sec: 37805.02
//
[ok]