# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/RrnaAD.hmm.txt
# target sequence database: proteomes/Trichomonas_vaginalis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: RrnaAD [M=265]
Accession: PF00398.19
Description: Ribosomal RNA adenine dimethylase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.2e-58 198.0 0.0 5.2e-58 197.7 0.0 1.1 1 tr|A2EVN6|A2EVN6_TRIVA rRNA adenine N(6)-methyltransferase O
0.00017 22.2 0.0 0.00022 21.9 0.0 1.1 1 tr|A2FEZ1|A2FEZ1_TRIVA S-adenosylmethionine-dependent methyl
0.0058 17.2 0.0 0.0066 17.0 0.0 1.2 1 tr|A2F2A3|A2F2A3_TRIVA Menaquinone biosynthesis methyltransf
0.0086 16.6 0.1 0.032 14.8 0.0 1.8 2 tr|A2FAI4|A2FAI4_TRIVA Uncharacterized protein OS=Trichomona
------ inclusion threshold ------
0.018 15.6 0.0 0.025 15.1 0.0 1.2 1 tr|A2DNX4|A2DNX4_TRIVA Arginine methyltransferase, putative
0.042 14.4 0.0 0.067 13.7 0.0 1.3 1 tr|A2EXH2|A2EXH2_TRIVA Uncharacterized protein OS=Trichomona
0.047 14.2 0.0 0.064 13.8 0.0 1.2 1 tr|A2FCQ2|A2FCQ2_TRIVA Arginine methyltransferase, putative
0.077 13.5 0.0 0.12 12.9 0.0 1.2 1 tr|A2H3A0|A2H3A0_TRIVA Uncharacterized protein OS=Trichomona
0.12 12.9 0.0 0.18 12.3 0.0 1.2 1 tr|A2G2M2|A2G2M2_TRIVA Uncharacterized protein OS=Trichomona
Domain annotation for each sequence (and alignments):
>> tr|A2EVN6|A2EVN6_TRIVA rRNA adenine N(6)-methyltransferase OS=Trichomonas vaginalis OX=5722 GN=TVAG_299080 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 197.7 0.0 9.4e-62 5.2e-58 3 254 .. 16 249 .. 14 262 .. 0.89
Alignments for each domain:
== domain 1 score: 197.7 bits; conditional E-value: 9.4e-62
CCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGH CS
RrnaAD 3 klrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkklskdeklkvvhqDflkf 88
k+ s+gqn+l++k v+++I+d+ ++++ +++leigpG G++Tee++ r +v ++E+d+r++ +l+kk+ +++l ++++D+l
tr|A2EVN6|A2EVN6_TRIVA 16 KMDHSLGQNILRSKVVVKNIVDAGEPRPGDKILEIGPGNGNMTEEMLSREgIEVIAIEKDQRMCVELKKKFPRHPNLRIINADVLSV 102
67789********************************************99************************************ PP
HHHHHHCTTTCCCCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-G CS
RrnaAD 89 etpeevtekdsihqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakvek 175
++pe+ l+++n+Py+is+++v++ll ++f ++ +l++qkef +r++arpg+ ++rl ++++++++vklv++v +
tr|A2EVN6|A2EVN6_TRIVA 103 DLPEFD----------LCISNIPYNISSAIVFKLLARPTF--RRTVLMVQKEFGERIVARPGKDGWGRLAINTQLYASVKLVMNVSR 177
****77..........9******************98888..9******************************************** PP
GCECS--SSSEEEEEEEE-SS-S--S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCCSGHH CS
RrnaAD 176 sifsPppkvdsalvelerkdedlpqkdlkkyesvvrkllnrkrktlstslksllpggelqalsstgindnalvkklsae 254
++f Pppkvds +v +++++ + p+ d ++++ +++ +++r ++tl++ +++ ++ +al ++ n ++ + ++ +
tr|A2EVN6|A2EVN6_TRIVA 178 KNFVPPPKVDSIVVSIQPREVQ-PDIDFNEWDGLIKLCFTRPNRTLQATFHK----KKIRALLNE--NREKYLSSINQQ 249
*********************9.8***********************98653....333333332..333333333333 PP
>> tr|A2FEZ1|A2FEZ1_TRIVA S-adenosylmethionine-dependent methyltransferase, putative OS=Trichomonas vaginalis OX=5722 G
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.9 0.0 3.9e-08 0.00022 19 93 .. 29 105 .. 22 133 .. 0.88
Alignments for each domain:
== domain 1 score: 21.9 bits; conditional E-value: 3.9e-08
HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CCGHHHHHH CS
RrnaAD 19 ineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls..kdeklkvvhqDflkfetpee 93
++e+ +++n++++ +l+ g G+G+ L + ak l + +++ ++k+l +++++++++q++ ++ + +
tr|A2FEZ1|A2FEZ1_TRIVA 29 VAEVRKQANITPESRILDFGCGTGLNGIYLINDAKTIGFLDPSSGMIEQVKKELAeiNKTNVEIYNQEISQTTMEPF 105
667889**********************************************999999***********99877664 PP
>> tr|A2F2A3|A2F2A3_TRIVA Menaquinone biosynthesis methyltransferase, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.0 0.0 1.2e-06 0.0066 32 96 .. 60 125 .. 46 190 .. 0.87
Alignments for each domain:
== domain 1 score: 17.0 bits; conditional E-value: 1.2e-06
SEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCT CS
RrnaAD 32 ltvleigpGkGilTeeL.akrakqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevte 96
t l +g G ++T eL ++ +++vv + e+ + ++kk ++++kl++ D+ k+++p++ +
tr|A2F2A3|A2F2A3_TRIVA 60 GTALNLGCGNSNMTSELlLNGFDKVVGIDFSEVVIGQMRKKYQLEQKLEWETGDITKMKFPNNHFD 125
57799**********99899******************************************7655 PP
>> tr|A2FAI4|A2FAI4_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_415010 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.8 0.0 5.7e-06 0.032 19 83 .. 25 91 .. 14 112 .. 0.88
2 ? -0.4 0.0 0.24 1.4e+03 160 196 .. 109 143 .. 98 167 .. 0.61
Alignments for each domain:
== domain 1 score: 14.8 bits; conditional E-value: 5.7e-06
HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S CS
RrnaAD 19 ineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls..kdeklkvvhq 83
++ I +++nl++++tvl+ g kG+l +L + ak+ l d++ + + ++ l+ +++ +++++
tr|A2FAI4|A2FAI4_TRIVA 25 VDIIKSQSNLNKSMTVLDFGCEKGFLGLKLIDDAKKIAFLDPDPNAISIAEESLKmmGKTNYEIINK 91
5667889*************************************99999999888888888888876 PP
== domain 2 score: -0.4 bits; conditional E-value: 0.24
HHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS CS
RrnaAD 160 lreaftdvklvakveksifsPppkvdsalvelerkde 196
++++ dvk ++ ks+ P+ +++++e+ k++
tr|A2FAI4|A2FAI4_TRIVA 109 SLHYVPDVKSALTKIKSLLNPD--GKLVIIEIYHKHF 143
4444445544444444444444..5556666655555 PP
>> tr|A2DNX4|A2DNX4_TRIVA Arginine methyltransferase, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_225950 PE=3 SV=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 15.1 0.0 4.4e-06 0.025 7 93 .. 20 113 .. 14 142 .. 0.75
Alignments for each domain:
== domain 1 score: 15.1 bits; conditional E-value: 4.4e-06
GCG--EE--HHHHHHHHHHH-GG....TTSEEEEES-TTTCCHHHHHCC-.SEEEEE-S-HHHHHHHHCHTT....TCCCEEEE-S- CS
RrnaAD 7 sygqnflknkkvineIldklnle....ekltvleigpGkGilTeeLakra.kqvvvlElderLakllqkkls....kdeklkvvhqD 84
s+ +l+++ v + +++ + +++ vleig+G+Gi++ ak k+v + E ++L+++++kk ++ k++++ q+
tr|A2DNX4|A2DNX4_TRIVA 20 SFHDIILRDTAVFSQFEKAIRYNstlfKDKIVLEIGSGTGIFSMMAAKSGaKHVYAWE--PSLLNIYSKKTIednnLQDKITILSQN 104
5555566666666655554444445559999***************999857777776..899999998876577788889999998 PP
CCGHHHHHH CS
RrnaAD 85 flkfetpee 93
+ ++ e+
tr|A2DNX4|A2DNX4_TRIVA 105 LEEIKLEEK 113
877776665 PP
>> tr|A2EXH2|A2EXH2_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_253130 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.7 0.0 1.2e-05 0.067 32 89 .. 77 135 .. 56 163 .. 0.84
Alignments for each domain:
== domain 1 score: 13.7 bits; conditional E-value: 1.2e-05
SEEEEES-TTTCCHHHH.HCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHH CS
RrnaAD 32 ltvleigpGkGilTeeL.akrakqvvvlElderLakllqkklskdeklkvvhqDflkfe 89
++ +ig+G G +e + k++k+ ++E ++++ + ++kl+++ lk + + + +++
tr|A2EXH2|A2EXH2_TRIVA 77 QKCADIGAGIGRVSELIlSKYFKEIDLVEPVQKFVDVAKEKLKNKVILKTYTCGAQDWK 135
6778**********96659***********************98888888888887776 PP
>> tr|A2FCQ2|A2FCQ2_TRIVA Arginine methyltransferase, putative OS=Trichomonas vaginalis OX=5722 GN=TVAG_048280 PE=3 SV=
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 13.8 0.0 1.1e-05 0.064 7 93 .. 20 113 .. 14 141 .. 0.75
Alignments for each domain:
== domain 1 score: 13.8 bits; conditional E-value: 1.1e-05
GCG--EE--HHHHHHHHHHH-GG....TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT....TCCCEEEE-S-C CS
RrnaAD 7 sygqnflknkkvineIldklnle....ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls....kdeklkvvhqDf 85
s+ +l+++ v + +++ + +++ vleig+G+Gi++ ak ++v ++L+++++kk ++ k++++ q+
tr|A2FCQ2|A2FCQ2_TRIVA 20 SFHDIILRDTAVFSQFEKAIRYNstlfKDKIVLEIGSGTGIFSMMAAKSGAKHVYA-WKPSLLNIYSKKTIednnLQDKITILSQNL 105
5555566666666655554444445559999*****************99888755.567888888777655777888899999988 PP
CGHHHHHH CS
RrnaAD 86 lkfetpee 93
+ ++ e+
tr|A2FCQ2|A2FCQ2_TRIVA 106 EEIKLEEK 113
77766665 PP
>> tr|A2H3A0|A2H3A0_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_207000 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.9 0.0 2.2e-05 0.12 55 126 .. 108 186 .. 103 203 .. 0.89
Alignments for each domain:
== domain 1 score: 12.9 bits; conditional E-value: 2.2e-05
EEEE-S-HHHHHHHHCHTTTCCCEEE.E-S-CCGHHHHHHHCT........TTCCCCEEEEEEE--TTTHHHHHHHHHHGG CS
RrnaAD 55 vvvlElderLakllqkklskdeklkv.vhqDflkfetpeevte........kdsihqeflvvanlPyeistqlvkqllees 126
++ +E++ +L+ +++ +k++ +k+ ++ ++k + + k +++ +vv ++P ++++q+++ +++++
tr|A2H3A0|A2H3A0_TRIVA 108 LTNIESRIALVDFYNL--KKANSIKIlFNKQIYKDRILDVTYAplkkildpKNPPNNGTIVVFHIPEQVTEQMIFSIFSKY 186
789***********99..89999**9889999999999977779999******************************9955 PP
>> tr|A2G2M2|A2G2M2_TRIVA Uncharacterized protein OS=Trichomonas vaginalis OX=5722 GN=TVAG_467070 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 12.3 0.0 3.3e-05 0.18 55 126 .. 170 248 .. 165 265 .. 0.89
Alignments for each domain:
== domain 1 score: 12.3 bits; conditional E-value: 3.3e-05
EEEE-S-HHHHHHHHCHTTTCCCEEE.E-S-CCGHHHHHHHCT........TTCCCCEEEEEEE--TTTHHHHHHHHHHGG CS
RrnaAD 55 vvvlElderLakllqkklskdeklkv.vhqDflkfetpeevte........kdsihqeflvvanlPyeistqlvkqllees 126
++ +E++ +L+ +++ +k++ +k+ ++ ++k + + k +++ +vv ++P ++++q+++ +++++
tr|A2G2M2|A2G2M2_TRIVA 170 LTNIESRIALVDFYNL--KKANSIKIlFNKQIYKDRILDVTYAplkkildpKNPPNNGTIVVFHIPEQVTEQMIFSIFSKY 248
789***********99..89999**9889999999999977779999******************************9955 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (265 nodes)
Target sequences: 50190 (17055200 residues searched)
Passed MSV filter: 1918 (0.0382148); expected 1003.8 (0.02)
Passed bias filter: 719 (0.0143256); expected 1003.8 (0.02)
Passed Vit filter: 48 (0.000956366); expected 50.2 (0.001)
Passed Fwd filter: 9 (0.000179319); expected 0.5 (1e-05)
Initial search space (Z): 50190 [actual number of targets]
Domain search space (domZ): 9 [number of targets reported over threshold]
# CPU time: 0.34u 0.01s 00:00:00.35 Elapsed: 00:00:00.13
# Mc/sec: 34766.37
//
[ok]