# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Amphimedon_queenslandica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-41 143.3 0.2 9.3e-41 141.2 0.2 1.8 1 tr|A0A1X7TI28|A0A1X7TI28_AMPQE Uncharacterized protein OS=Amphi
1.3e-17 65.2 1.0 1.6e-17 65.0 1.0 1.0 1 tr|A0A1X7U9Q7|A0A1X7U9Q7_AMPQE Uncharacterized protein OS=Amphi
4.8e-12 47.0 0.0 8.6e-12 46.2 0.0 1.4 1 tr|A0A1X7TDZ6|A0A1X7TDZ6_AMPQE Uncharacterized protein OS=Amphi
2.9e-06 28.0 0.0 3.5e-06 27.8 0.0 1.1 1 tr|A0A1X7SRA3|A0A1X7SRA3_AMPQE Uncharacterized protein OS=Amphi
Domain annotation for each sequence (and alignments):
>> tr|A0A1X7TI28|A0A1X7TI28_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 141.2 0.2 8.6e-45 9.3e-41 38 273 .. 1 270 [. 1 272 [. 0.84
Alignments for each domain:
== domain 1 score: 141.2 bits; conditional E-value: 8.6e-45
Rsm22 38 lldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaalrrsvirealeleea........... 104
+ld g+g gta+wa++ +w ++ e+ +id+s+++ +++ l + + + a + +e+
tr|A0A1X7TI28|A0A1X7TI28_AMPQE 1 MLDYGSGLGTAVWAVHSIWGnSVYEYQTIDTSSDMGDLARSLRNGGSDWAYIIDPSLSACPAPTSTESikgvyfrqylp 79
79******************999****************9998877666555333322222222222235556667777 PP
Rsm22 105 .......dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal......kaagfhivAPCP 169
dLv+ +y L el + ++ + lW k++k+lv++E Gt +Gf + +aR++l +++ h+vAPCP
tr|A0A1X7TI28|A0A1X7TI28_AMPQE 80 vsskvkyDLVVSAYSLSELPSpSLWKQALLSLWGKTEKYLVLIEFGTSSGFDIISQARDFLlnggnnDQDKCHVVAPCP 158
7888***************99677899999***********************************99899********* PP
Rsm22 170 HeaaCPlvate...dwChFsqrvaRlslhrlaksasvpvedekfsy..vakerqprasa...aaRvvrptkvrskkvli 240
H+++CP +a C+F+qrva +++ +s+ + e f y ++k++ p++ R++ ptk+r+k+ ++
tr|A0A1X7TI28|A0A1X7TI28_AMPQE 159 HDLQCPKAAAAdyyRICKFAQRVAI-PFTEYTRCRSKGFYIENFCYliLKKGERPHQFIddiPCRLLLPTKKRTKHTIC 236
*******999945557*******94.44456666678888888888768888888776677799*************** PP
Rsm22 241 dlCsedetlqrlvvtK.rkGeaykaArkaeWGDr 273
+lC ++++ l++ K ++ e+ ++ rk eWGD+
tr|A0A1X7TI28|A0A1X7TI28_AMPQE 237 ELCCPNGKAVTLIFSKaKQRELLRTTRKKEWGDT 270
****************8888*************7 PP
>> tr|A0A1X7U9Q7|A0A1X7U9Q7_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 65.0 1.0 1.4e-21 1.6e-17 168 273 .. 14 127 .. 8 129 .. 0.87
Alignments for each domain:
== domain 1 score: 65.0 bits; conditional E-value: 1.4e-21
Rsm22 168 CPHeaaCPlvate...dwChFsqrvaRlslhrlaksasvpvedekfsy..vakerqprasa...aaRvvrptkvrskkv 238
CPH+++CP +a + C+F+qrva +++ +s+ + e fsy ++k++ p++ R++ ptk+r+k+
tr|A0A1X7U9Q7|A0A1X7U9Q7_AMPQE 14 CPHDLQCPKAAATdyyKICKFAQRVAI-PFTEYTRCRSKGFYIENFSYliLKKGERPHQFIddiPCRLLLPTKKRTKHT 91
*********999956667*******94.45556777788999999999867888777766577799************* PP
Rsm22 239 lidlCsedetlqrlvvtK.rkGeaykaArkaeWGDr 273
+++lC ++++ l++ K ++ e+ ++ rk eWGD+
tr|A0A1X7U9Q7|A0A1X7U9Q7_AMPQE 92 ICELCCPNGKAVTLIFSKaKQRELLRTTRKKEWGDT 127
******************8888*************7 PP
>> tr|A0A1X7TDZ6|A0A1X7TDZ6_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.2 0.0 7.9e-16 8.6e-12 4 80 .. 117 194 .. 114 207 .. 0.93
Alignments for each domain:
== domain 1 score: 46.2 bits; conditional E-value: 7.9e-16
Rsm22 4 siaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaa 80
si Ya+ r + y +rvL+el + ++ f+P+++ld g+g gta+wa++ +w ++ e+ +id+s+++ +++ l +
tr|A0A1X7TDZ6|A0A1X7TDZ6_AMPQE 117 SIGYAASRTQPVYGSTYRVLHELSNIDKGFKPETMLDYGSGLGTAVWAVHSIWGkSVYEYQTIDTSSDMGDLARSLRN 194
789***************************************************999*************99998865 PP
>> tr|A0A1X7SRA3|A0A1X7SRA3_AMPQE Uncharacterized protein OS=Amphimedon queenslandica OX=400682 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 27.8 0.0 3.2e-10 3.5e-06 3 50 .. 33 80 .] 31 80 .] 0.97
Alignments for each domain:
== domain 1 score: 27.8 bits; conditional E-value: 3.2e-10
Rsm22 3 esiaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalw 50
+si Ya+ r + y +rvL+el + ++ f+P+++ld g+g gta+w
tr|A0A1X7SRA3|A0A1X7SRA3_AMPQE 33 VSIGYAASRTQPVYGSTYRVLHELSNIDKGFKPETMLDYGSGLGTAVW 80
7999*******************************************9 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 43435 (14716620 residues searched)
Passed MSV filter: 1045 (0.0240589); expected 868.7 (0.02)
Passed bias filter: 768 (0.0176816); expected 868.7 (0.02)
Passed Vit filter: 46 (0.00105905); expected 43.4 (0.001)
Passed Fwd filter: 4 (9.20916e-05); expected 0.4 (1e-05)
Initial search space (Z): 43435 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.29u 0.01s 00:00:00.30 Elapsed: 00:00:00.10
# Mc/sec: 40470.71
//
[ok]