# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Rsm22.hmm.txt
# target sequence database:        proteomes/Anolis_carolinensis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Rsm22  [M=275]
Accession:   PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    4.1e-65  219.8   0.0    1.4e-64  218.1   0.0    1.7  2  tr|H9GD64|H9GD64_ANOCA  Methyltransferase like 17 OS=Anolis c


Domain annotation for each sequence (and alignments):
>> tr|H9GD64|H9GD64_ANOCA  Methyltransferase like 17 OS=Anolis carolinensis OX=28377 GN=METTL17 PE=4 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3     0.058   1.1e+03      53     101 ..     125     174 ..     118     185 .. 0.73
   2 !  218.1   0.0   7.4e-69   1.4e-64       4     275 .]     199     485 ..     196     485 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.058
                   Rsm22  53 selweeleevlvidaseelleiskelaadapel.keaalrrsvirealel 101
                             + lw++ +++ ++d  +++ ++ ++l +++ ++ +++al +s   +  +l
  tr|H9GD64|H9GD64_ANOCA 125 NYLWSRKRPMETVDLRKKAEQMEQKLRQEMAHIhRKDALDSSSEVDEKKL 174
                             66899999999***999999999999988766614445555555555555 PP

  == domain 2  score: 218.1 bits;  conditional E-value: 7.4e-69
                   Rsm22   4 siaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaa 89 
                             s  Y++ar+ + +a+++r+L+e+++rvpdf+P++lld+g+g+gt+ waa+ +w   ++e+++id s+++l ++++l++   e++   
  tr|H9GD64|H9GD64_ANOCA 199 SFLYMAARMDGMFAAVYRALHEIQKRVPDFQPRTLLDFGSGTGTVSWAAHSIWGeTIKEYMNIDSSAAMLDLAEKLMKGLSENQDPL 285
                             678**************************************************9899****************************** PP

                   Rsm22  90 lrrsvirealeleea...dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal.........kaagfh 163
                             +  +  r+ l + ++   dLv+ +y L+el   ++r + v+ lW+k++  lv+vE+Gt++G++ ++eaR+++           ++ h
  tr|H9GD64|H9GD64_ANOCA 286 FPGVYFRQFLPVSPKvkfDLVVSAYSLNELRSySERVETVQTLWRKTDGFLVLVENGTKEGHQILMEARDVVlkgtdkvvhDPREPH 372
                             ******9999999989******************************************************9999999888777899* PP

                   Rsm22 164 ivAPCPHeaaCPlvate..dwChFsqrvaRlslhrlaksasvpvedekfsy..vakerqprasaaaRvvrptkvrskkvlidlCsed 246
                             + APCPH++ CPl+ +    +C+F+qr+  l       +      +e+fs+  ++++ +++++ ++R+ +p   r +++ ++lC  d
  tr|H9GD64|H9GD64_ANOCA 373 VFAPCPHHLPCPLLSSDrvLPCNFTQRYYALPFSWNPAQ-----KEERFSFliLRRGAGETEEPWPRITQPVLCRPRHIHVRLCCPD 454
                             *************9998788********98877665544.....79*****8888999999999*********************** PP

                   Rsm22 247 etlqrlvvtK.rkG.eaykaArkaeWGDrlp 275
                             +tlq+ vvt  ++G ++y++Ar+++ GDrlp
  tr|H9GD64|H9GD64_ANOCA 455 GTLQHAVVTAqKHGrDLYRCARNSQCGDRLP 485
                             *********99***999***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (275 nodes)
Target sequences:                        18528  (9796552 residues searched)
Passed MSV filter:                       537  (0.0289832); expected 370.6 (0.02)
Passed bias filter:                      372  (0.0200777); expected 370.6 (0.02)
Passed Vit filter:                        38  (0.00205095); expected 18.5 (0.001)
Passed Fwd filter:                         1  (5.39724e-05); expected 0.2 (1e-05)
Initial search space (Z):              18528  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.01s 00:00:00.20 Elapsed: 00:00:00.08
# Mc/sec: 33675.65
//
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