# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Branchiostoma_floridae.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.7e-60 203.6 1.0 2.6e-32 112.9 0.0 2.8 3 tr|C3XZS8|C3XZS8_BRAFL Uncharacterized protein OS=Branchiost
9e-06 25.8 0.0 0.0024 17.9 0.0 2.2 2 tr|C3YC49|C3YC49_BRAFL Uncharacterized protein OS=Branchiost
------ inclusion threshold ------
0.18 11.7 0.0 0.31 10.9 0.0 1.3 1 tr|C3ZE13|C3ZE13_BRAFL Uncharacterized protein OS=Branchiost
0.35 10.8 0.0 0.52 10.2 0.0 1.2 1 tr|C3YCR0|C3YCR0_BRAFL Uncharacterized protein OS=Branchiost
Domain annotation for each sequence (and alignments):
>> tr|C3XZS8|C3XZS8_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_85605 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.9 0.1 0.36 2.5e+03 48 90 .. 97 139 .. 92 160 .. 0.75
2 ! 112.9 0.0 3.6e-36 2.6e-32 4 162 .. 176 339 .. 173 346 .. 0.91
3 ! 88.0 0.2 1.4e-28 9.7e-25 161 275 .] 413 535 .. 407 535 .. 0.84
Alignments for each domain:
== domain 1 score: -1.9 bits; conditional E-value: 0.36
Rsm22 48 alwaaselweeleevlvidaseelleiskelaadapelkeaal 90
a++ ++ lw++ ++v + ++++ei++e +++ +e++l
tr|C3XZS8|C3XZS8_BRAFL 97 ATYLTNYLWSRKRPVEDAEVRRKAQEIAEEYTQQGLLQEEENL 139
6677888999999999999999999999998887766555543 PP
== domain 2 score: 112.9 bits; conditional E-value: 3.6e-36
Rsm22 4 siaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaa 89
+aY++ + p+ ya+ +rvL el +r p+f+P +l+d g+g g+++waa+ +w l+e+ d+s++++ +++ l++ +e+ +
tr|C3XZS8|C3XZS8_BRAFL 176 GLAYLVGKAPGVYAATYRVLAELSKREPKFRPMTLMDYGSGAGMTVWAAHTIWGhWLREYSCFDTSSSMNDLAELLLRGGEENGKLL 262
589***************************************************7799***********************999996 PP
Rsm22 90 lrrsvirealeleea....dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaRealkaagf 162
+ + + + el + dLv+++y L e +r +v++lW+k+s+ lvivE+Gt +G+++v+eaR+ + ++
tr|C3XZS8|C3XZS8_BRAFL 263 HPNIFF-RQYELPNPnikhDLVVCAYSLSEQPSaVQRMRVVRRLWRKTSQFLVIVENGTNEGHKMVMEARDLVLSGKA 339
666666.666776656888***********99989***********************************98755554 PP
== domain 3 score: 88.0 bits; conditional E-value: 1.4e-28
Rsm22 161 gfhivAPCPHeaaCPlvate..dwChFsqrvaRls.lhrlaksasvpvedekfsy..vakerqprasa.aaRvvrptkvrskkvlid 241
+h+ PCPH++ CP++a++ ++C+F q+++ + + + ks + e fsy ++k++ +++s ++R+vrp r ++v ++
tr|C3XZS8|C3XZS8_BRAFL 413 SAHVFSPCPHDTSCPRLADNsrTPCNFQQSYQPPNfMPVPPKSDGNSSLFETFSYvvLRKGQRSEESIrWPRIVRPVLRRPRHVHCR 499
68****************9999**********5441444455444444445666655899998888877****************** PP
Rsm22 242 lCsedetlqrlvvtK.rkG.eaykaArkaeWGDrlp 275
+C +++lq v+t ++G +y++Ar +eWGD lp
tr|C3XZS8|C3XZS8_BRAFL 500 MCLGNGQLQDAVLTGrKHGkPLYRCARMSEWGDMLP 535
**************989**88************985 PP
>> tr|C3YC49|C3YC49_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_126511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 17.9 0.0 3.4e-07 0.0024 33 141 .. 294 405 .. 272 407 .. 0.89
2 ! 5.7 0.0 0.0017 12 97 141 .. 521 569 .. 475 571 .. 0.81
Alignments for each domain:
== domain 1 score: 17.9 bits; conditional E-value: 3.4e-07
Rsm22 33 flPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrsvirealeleea..dLviisyvLlele 117
+Pk++ldvg g + ++ e++++ +v+ +d +++ + + + p + + + +e+l++ ++ d+v +yvL+e+
tr|C3YC49|C3YC49_BRAFL 294 LKPKTILDVGTGNCFSAFVFGEMFPQ-SDVIGVDLAAPFVRFCRLWKSHRPGGAPNVKFYQDNGEKLHFPDStfDVVNFAYVLHEMP 379
57**********************97.57999******************9988887777888899***99899************* PP
Rsm22 118 desreklvknlWakask..ilvivEe 141
++ + + ++W+ ++ +l i+E+
tr|C3YC49|C3YC49_BRAFL 380 SDNAQRALAEAWRVLKPggTLNIIEP 405
*999*********9886668888876 PP
== domain 2 score: 5.7 bits; conditional E-value: 0.0017
Rsm22 97 ealeleea..dLviisyvLleledesreklvknlWakask..ilvivEe 141
e+l++ ++ d+v +yvL+e+ ++ + + ++W+ ++ +l i+E+
tr|C3YC49|C3YC49_BRAFL 521 EKLHFPDStfDVVNFAYVLHEMPSDNAQRALAEAWRVLKPggTLNIIEP 569
5666666678**************999*********9886668888876 PP
>> tr|C3ZE13|C3ZE13_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_65542 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.9 0.0 4.3e-05 0.31 36 124 .. 8 104 .. 4 112 .. 0.82
Alignments for each domain:
== domain 1 score: 10.9 bits; conditional E-value: 4.3e-05
Rsm22 36 kslldvgegpgtalwaaselweeleevlvidaseelleisk.elaadapelkeaalrrsvireale.leea.......dLviisyvL 113
+++ld+g+g g +a +l e +v+ +d++ee le ++ ++ + ++ + +++++++ +e l ea d viis +
tr|C3ZE13|C3ZE13_BRAFL 8 THVLDLGSGAGHDCFALAKLVGEKGHVTGVDMTEEQLEFARsYIDYHRETFGYSEPNTDFVMAYIEkLGEAglkddtfD-VIISNCV 93
589*******************************999998625677888888899999999998762555578875533.8999999 PP
Rsm22 114 leledesrekl 124
+l +++r++l
tr|C3ZE13|C3ZE13_BRAFL 94 VNLSPDKRAVL 104
99999998765 PP
>> tr|C3YCR0|C3YCR0_BRAFL Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_115286 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 10.2 0.0 7.3e-05 0.52 147 173 .. 51 77 .. 45 83 .. 0.90
Alignments for each domain:
== domain 1 score: 10.2 bits; conditional E-value: 7.3e-05
Rsm22 147 frrvleaRealkaagfhivAPCPHeaa 173
+++v ++R+ lk +++++A C H a+
tr|C3YCR0|C3YCR0_BRAFL 51 YKMVFVVRQDLKMGKGKVAAQCSHAAV 77
99**********************986 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 28542 (13248087 residues searched)
Passed MSV filter: 850 (0.0297807); expected 570.8 (0.02)
Passed bias filter: 539 (0.0188845); expected 570.8 (0.02)
Passed Vit filter: 38 (0.00133137); expected 28.5 (0.001)
Passed Fwd filter: 4 (0.000140144); expected 0.3 (1e-05)
Initial search space (Z): 28542 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 0.27u 0.01s 00:00:00.28 Elapsed: 00:00:00.09
# Mc/sec: 40480.27
//
[ok]