# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Rsm22.hmm.txt
# target sequence database:        proteomes/Caenorhabditis_elegans.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Rsm22  [M=275]
Accession:   PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    4.5e-46  157.5   0.0    3.1e-25   89.1   0.0    2.2  2  tr|P91862|P91862_CAEEL  Uncharacterized protein OS=Caenorhabd


Domain annotation for each sequence (and alignments):
>> tr|P91862|P91862_CAEEL  Uncharacterized protein OS=Caenorhabditis elegans OX=6239 GN=CELE_F32A7.4 PE=1 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   1.6e-29   3.1e-25       2     162 ..     173     342 ..     172     345 .. 0.95
   2 !   66.3   0.0   1.4e-22   2.8e-18     162     275 .]     398     513 ..     366     513 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 1.6e-29
                   Rsm22   2 eesiaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkea 88 
                             e ++aY larl+ +ya + r+L+e++  +pdf+P+++ld+g+g g++ wa+++ w++++e++++d s+++ + s + +++ ++ +  
  tr|P91862|P91862_CAEEL 173 ESAAAYSLARLAPNYAEITRTLEEFN-TIPDFQPETVLDFGSGAGAGFWAIQNKWPDVKEITMVDLSDAMMKFSMDSLRNEQSSEAS 258
                             5689*********************7.69**************************************************99999999 PP

                   Rsm22  89 alrrsvirealeleea.........dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaRealkaagf 162
                             +  r ++++ +++            d+v    vL e+   e r +l++ lW+++++ l+++E      f  +leaR++l  +g+
  tr|P91862|P91862_CAEEL 259 QNGRPFVHNNVNFRRHlipslnttyDVVLAHRVLCEIGSsETRLQLIESLWKRTNRFLILIESSQTGAFGGLLEARDFLLTQGT 342
                             999**********9999999****99999999*****99999**********************9999***********88775 PP

  == domain 2  score: 66.3 bits;  conditional E-value: 1.4e-22
                   Rsm22 162 fhivAPCPHeaaCPlvatedwChFsqrvaRlslh.rlaksasvpvedekfsy..vakerqprasaaaRvvrptkvrskkvlidlCse 245
                             + ++APCPH++ CPl  +   C F +r++  + + r  +++s   e +kf y  ++k++ ++++  +  + + ++  ++v +d+C+ 
  tr|P91862|P91862_CAEEL 398 ATVLAPCPHDLGCPLGVH-SSCTFNTRFQPIRADgRRSEKESDGTEVSKFTYmiLEKSQRKVNNEHTERILKNRKLGGHVTCDVCTA 483
                             6799***********999.9*********6665523344668999*******9888888888877666667788899********** PP

                   Rsm22 246 detlqrlvvtKrkGeaykaArkaeWGDrlp 275
                                +qr ++ K++Ge+y a r+ + GD+lp
  tr|P91862|P91862_CAEEL 484 FRGIQRITLSKKHGEMYTALRSRRDGDLLP 513
                             ***************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (275 nodes)
Target sequences:                        20008  (8229220 residues searched)
Passed MSV filter:                       569  (0.0284386); expected 400.2 (0.02)
Passed bias filter:                      413  (0.0206417); expected 400.2 (0.02)
Passed Vit filter:                        33  (0.00164934); expected 20.0 (0.001)
Passed Fwd filter:                         1  (4.998e-05); expected 0.2 (1e-05)
Initial search space (Z):              20008  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.00s 00:00:00.17 Elapsed: 00:00:00.06
# Mc/sec: 37717.26
//
[ok]