# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Ciona_savignyi.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-53 180.3 0.0 4.6e-53 179.7 0.0 1.3 1 tr|H2Z5Q2|H2Z5Q2_CIOSA Uncharacterized protein OS=Ciona savi
------ inclusion threshold ------
0.053 12.2 0.0 0.081 11.6 0.0 1.2 1 tr|H2YTR8|H2YTR8_CIOSA Methyltransferase-like protein OS=Cio
0.13 10.9 4.1 0.11 11.2 3.0 1.3 1 tr|H2YUM2|H2YUM2_CIOSA Uncharacterized protein OS=Ciona savi
Domain annotation for each sequence (and alignments):
>> tr|H2Z5Q2|H2Z5Q2_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 179.7 0.0 1.2e-56 4.6e-53 3 273 .. 111 401 .. 109 403 .. 0.87
Alignments for each domain:
== domain 1 score: 179.7 bits; conditional E-value: 1.2e-56
Rsm22 3 esiaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkea 88
+s a++lar p+ ya rvL +l++ + f+Pks+ld+g+g+gt++waa++lw+ +l++++ +d se+++++s++l a +
tr|H2Z5Q2|H2Z5Q2_CIOSA 111 NSHAFLLARSPGCYASSFRVLSNLKHEDFSFTPKSMLDFGSGTGTSMWAANKLWKeSLKQYVCVDSSEHMNRLSHTLHTTADTESDL 197
789****************************************************99*******************98877665554 PP
Rsm22 89 alrrsvireal.eleea.dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal............... 157
+ir+ l ++ + dLvi sy+L e ++r +l+k lW+k+s++lvi+E+G +G++ ++eaR+ l
tr|H2Z5Q2|H2Z5Q2_CIOSA 198 -PPGIFIRKFLpSFKMTyDLVISSYTLSEQPSlKERMILLKLLWEKTSDYLVIIEHGNFNGYQIIMEARNLLvsgiegikgqktwkn 283
.67777755541455449************999**********************************************99988866 PP
Rsm22 158 kaagfhivAPCPHeaaCPlvatedwChFsqrvaRlslhrlaksasvpvedekfsy..vakerqprasa.....aaRvvrptkvrskk 237
+++ +vAPCPH+ CP+ +++ C Fsq ++ s + e fsy ++k++ ++++ ++Rvv ++ ++
tr|H2Z5Q2|H2Z5Q2_CIOSA 284 WPDNATVVAPCPHDGPCPMWGSKTSCIFSQTYNVPSFAKMGTA------SESFSYvvLKKNSS-VENTqrthsWPRVVGGPNEQKSC 363
6789****************************98887766654......58899974455443.333246666************** PP
Rsm22 238 vlidlCsedetlqrlvvtK.rkGeayk.aArkaeWGDr 273
v + +C++d+ l++l +tK +G++ k + +k + GD
tr|H2Z5Q2|H2Z5Q2_CIOSA 364 VDCSVCTTDGVLENLHITKkIHGTNLKsMVKKCHRGDY 401
*******************66**666526788888886 PP
>> tr|H2YTR8|H2YTR8_CIOSA Methyltransferase-like protein OS=Ciona savignyi OX=51511 PE=3 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.6 0.0 2.1e-05 0.081 22 130 .. 66 176 .. 61 190 .. 0.80
Alignments for each domain:
== domain 1 score: 11.6 bits; conditional E-value: 2.1e-05
Rsm22 22 vLdelaervpdflPkslldvgegpgtalwaaselweeleevlvidas.eelleiske..laadapelkeaalrrsvirealeleead 105
+e++er++ + ll+ g g+g a++ + +++l+ + d s ++++++ ++ +++ ++ + ++ + + ++ +++d
tr|H2YTR8|H2YTR8_CIOSA 66 EFNEIEERIKSNEHTVLLEAGCGVGNAIFPLMDKYSNLFV-YACDFSpRAVQHVKDNpgFSKKNCNAFQCDISTQSLCDNIQENSVD 151
5678899999999999999999999999999999999985.556666255667766533566666666666777778899999999* PP
Rsm22 106 LviisyvLleledesreklvknlWa 130
Lv++ +vL +++++ e + +n+ +
tr|H2YTR8|H2YTR8_CIOSA 152 LVTLIFVLSAIHPNKFEFVFENIHK 176
*****************99999855 PP
>> tr|H2YUM2|H2YUM2_CIOSA Uncharacterized protein OS=Ciona savignyi OX=51511 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.2 3.0 2.8e-05 0.11 166 207 .. 26 67 .. 15 84 .. 0.86
Alignments for each domain:
== domain 1 score: 11.2 bits; conditional E-value: 2.8e-05
Rsm22 166 APCPHeaaCPlvatedwChFsqrvaRlslhrlaksasvpved 207
APC e++CP + ++C F + + l+ + ++ s + e
tr|H2YUM2|H2YUM2_CIOSA 26 APCRDESICPQLIASTPCTFLKLSEQLRCPVSCNRCSSASES 67
9*******************9999999998888876766665 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 11592 (4231397 residues searched)
Passed MSV filter: 305 (0.0263112); expected 231.8 (0.02)
Passed bias filter: 214 (0.018461); expected 231.8 (0.02)
Passed Vit filter: 13 (0.00112146); expected 11.6 (0.001)
Passed Fwd filter: 3 (0.000258799); expected 0.1 (1e-05)
Initial search space (Z): 11592 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.04
# Mc/sec: 29090.85
//
[ok]