# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Danio_rerio.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.6e-61 207.8 0.1 5.3e-61 206.8 0.0 1.5 2 tr|A0A0R4IJY0|A0A0R4IJY0_DANRE Methyltransferase-like 17 OS=Dan
------ inclusion threshold ------
0.18 11.6 1.7 0.19 11.5 0.6 1.6 2 tr|X1WCG6|X1WCG6_DANRE Si:dkey-7i4.24 OS=Danio rerio OX
Domain annotation for each sequence (and alignments):
>> tr|A0A0R4IJY0|A0A0R4IJY0_DANRE Methyltransferase-like 17 OS=Danio rerio OX=7955 GN=mettl17 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.4 0.2 0.26 3.3e+03 78 116 .. 79 117 .. 67 138 .. 0.58
2 ! 206.8 0.0 4.1e-65 5.3e-61 5 275 .] 159 449 .. 155 449 .. 0.91
Alignments for each domain:
== domain 1 score: -2.4 bits; conditional E-value: 0.26
Rsm22 78 laadapelkeaalrrsvirealeleeadLviisyvLlel 116
l++ a++l + + r+++ e +l e+ ++ L+e
tr|A0A0R4IJY0|A0A0R4IJY0_DANRE 79 LTERAQKLSNFLWSRKRVIESSQLREKAIILERKFLEEE 117
455555555555555555555555555555544444444 PP
== domain 2 score: 206.8 bits; conditional E-value: 4.1e-65
Rsm22 5 iaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaada 82
++Y++arl++ ya++ r+L+e+++r+p f+P slld+g+g gt++waa+ lw +l+e++ +d s ++++++++l+ +
tr|A0A0R4IJY0|A0A0R4IJY0_DANRE 159 LVYMVARLAGGYAAVLRALNEIKKRDPLFVPYSLLDFGSGLGTGTWAAHRLWGdSLKEYVCVDSSGDMNTLAEQLLLEG 237
69***************************************************99************************ PP
Rsm22 83 pelkeaalrrsvirealeleea...dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal 157
e ++ + +++ r+ l + ++ dLv+ ++ L el+ ++r +++ lW+k++++lv+vE+Gt++G++ ++eaR+a+
tr|A0A0R4IJY0|A0A0R4IJY0_DANRE 238 SERNNPTIKQVYFRQFLPVSPKvqfDLVVAAFSLSELATlDERLNVISTLWRKTNSYLVLVENGTKEGHQILMEARDAI 316
*****99******99999999899*****************************************************99 PP
Rsm22 158 .........kaagfhivAPCPHeaaCPlvate..dwChFsqrvaRlslhrlaksasvpvedekfsyvakerqprasa.. 223
++ i APC He++CP + + +C+F q + l l r + +e+fsy+ +r ++a
tr|A0A0R4IJY0|A0A0R4IJY0_DANRE 317 lkredeilhDPRRPSIFAPCTHELKCPKLIRQpvVPCNFFQFYYSLPLSRSQE-----RQQERFSYLIVSRSDGEKAqk 390
8877775554556789***********88777779*******99888876655.....479*****5555555444445 PP
Rsm22 224 .....aaRvvrptkvrskkvlidlCsedetlqrlvvtK.rkG.eaykaArkaeWGDrlp 275
+aRv+++ + r ++v ++lC +++l++l vt r+G ++y++Ar+++WGD+lp
tr|A0A0R4IJY0|A0A0R4IJY0_DANRE 391 aehwdMARVIAQVHRRPRHVQCQLCCVNGELKQLAVTArRHGkDMYRCARNSDWGDLLP 449
899999*******************************989**999***********985 PP
>> tr|X1WCG6|X1WCG6_DANRE Si:dkey-7i4.24 OS=Danio rerio OX=7955 GN=si:dkey-7i4.24 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.0 0.26 3.4e+03 64 107 .. 86 128 .. 69 164 .. 0.69
2 ? 11.5 0.6 1.5e-05 0.19 66 156 .. 226 330 .. 160 355 .. 0.76
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 0.26
Rsm22 64 vidaseelleiskelaadapelkeaalrrsvirealeleeadLv 107
+++ +++l++ k+la++ +k + ++i e+ el+++d+
tr|X1WCG6|X1WCG6_DANRE 86 AVEKNKPVLAV-KYLAKARDWIKDLIKDVDRIVEKYELHTKDIA 128
56666666665.67777777777777777777777777777654 PP
== domain 2 score: 11.5 bits; conditional E-value: 1.5e-05
Rsm22 66 daseelleis...kelaadapelkeaalrrsvirealeleea..........dLviisyvLleled.esreklvknlWakaskilvi 138
+++++++++ ++l+ad+++lk+++++ ++ + +++ a d + +s v +l++ ++ + +kn W++++++l
tr|X1WCG6|X1WCG6_DANRE 226 EQAAQMKALEaelNNLIADKTALKQKQWQLQLQTIDWQMKAAkasfdrssipDPIHLSEVQGSLTKiQEILIQLKNFWESVAQMLDY 312
4444444443111445667777777778777776666666667789999*****************9999999************** PP
Rsm22 139 vEeGtpaGfrrvleaRea 156
+E+ t G ++ +++e
tr|X1WCG6|X1WCG6_DANRE 313 LEQRTFVGEDLIEDLKEL 330
*********999998864 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 25687 (13798380 residues searched)
Passed MSV filter: 655 (0.0254993); expected 513.7 (0.02)
Passed bias filter: 465 (0.0181025); expected 513.7 (0.02)
Passed Vit filter: 31 (0.00120684); expected 25.7 (0.001)
Passed Fwd filter: 2 (7.78604e-05); expected 0.3 (1e-05)
Initial search space (Z): 25687 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.27u 0.01s 00:00:00.28 Elapsed: 00:00:00.10
# Mc/sec: 37945.54
//
[ok]