# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Dictyostelium_discoideum.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3e-69 232.8 0.0 6e-69 231.9 0.0 1.5 1 tr|Q54DG6|Q54DG6_DICDI Uncharacterized protein OS=Dictyostel
------ inclusion threshold ------
0.11 11.3 0.0 0.11 11.3 0.0 1.2 1 tr|Q54LN7|Q54LN7_DICDI Uncharacterized protein OS=Dictyostel
Domain annotation for each sequence (and alignments):
>> tr|Q54DG6|Q54DG6_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB0184302 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 231.9 0.0 9.4e-73 6e-69 3 274 .. 624 939 .. 622 940 .. 0.91
Alignments for each domain:
== domain 1 score: 231.9 bits; conditional E-value: 9.4e-73
Rsm22 3 esiaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkea 88
+++aY+ +r+p+ ya +rv e+++r p+f+P+slld g+gpgt+lw a +w +++++ ++ s + ++k+l++ +++ +
tr|Q54DG6|Q54DG6_DICDI 624 QVLAYISHRMPGVYACTHRVFSEINSRLPNFKPTSLLDYGSGPGTVLWSADTIWGdSIKRIRAVEPSTYMSDVAKKLLEGNTNRVKW 710
689****************************************************99********************9876554333 PP
Rsm22 89 alrrsvirealeleea..........dLviisyvLleled.esreklvknlWakask..ilvivEeGtpaGfrrvleaReal..... 157
s + ++++l+ + ++v+ syvL el e r++lv++lW +++ ilv++E+Gtp Gf+ ++eaR+ +
tr|Q54DG6|Q54DG6_DICDI 711 ----SPYLNTANLKRQdgtipstelnEMVTASYVLSELPSqEARNDLVRELWSHVKPsgILVLIEPGTPIGFNIIKEARQLIldeep 793
....33334445544445666679999***********9989**********9987666*********************999**** PP
Rsm22 158 ......kaagfhivAPCPHeaaCPlvatedwChFsqrvaRlslhrlak..sasvpvedekfsyvakerqprasa............. 223
k ++++vAPCPH+ +CP+ wChFsqrv+R + lak + +p+edek+sy+ ++ ++s
tr|Q54DG6|Q54DG6_DICDI 794 eilsiyKSTKAQVVAPCPHSGKCPMGSL-SWCHFSQRVERPVFQKLAKgpHSTMPYEDEKYSYIVLSKVVHSSIqnqlekqlqiypt 879
****99999***************9887.9******************988899*********77666666666678999******* PP
Rsm22 224 ........aaRvvrptkvrskkvlidlCsedetlqrlvvtKrkG.eaykaArkaeWGDrl 274
++R++ + +r ++v++d+Cs +++l+r++v +++G ++y+ Ark+ W D +
tr|Q54DG6|Q54DG6_DICDI 880 eeleptknWSRLIEAPLKRGGHVIMDVCSPNGSLNRVTVARSHGkQMYREARKSFWSDSF 939
********************************************999***********87 PP
>> tr|Q54LN7|Q54LN7_DICDI Uncharacterized protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0286529 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.3 0.0 1.7e-05 0.11 31 61 .. 52 82 .. 9 85 .] 0.83
Alignments for each domain:
== domain 1 score: 11.3 bits; conditional E-value: 1.7e-05
Rsm22 31 pdflPkslldvgegpgtalwaaselweelee 61
++ +P ++ld++ g+g +++a+e++++l+
tr|Q54LN7|Q54LN7_DICDI 52 NQEKPMKILDIACGTGPLTIVANEIFKKLQI 82
4568***********************9875 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 12739 (6856946 residues searched)
Passed MSV filter: 421 (0.0330481); expected 254.8 (0.02)
Passed bias filter: 320 (0.0251197); expected 254.8 (0.02)
Passed Vit filter: 28 (0.00219797); expected 12.7 (0.001)
Passed Fwd filter: 2 (0.000156998); expected 0.1 (1e-05)
Initial search space (Z): 12739 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.15u 0.00s 00:00:00.15 Elapsed: 00:00:00.05
# Mc/sec: 37713.20
//
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