# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Rsm22.hmm.txt
# target sequence database:        proteomes/Drosophila_melanogaster.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Rsm22  [M=275]
Accession:   PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
   2.4e-102  341.5   0.0   3.3e-102  341.1   0.0    1.2  1  tr|Q9VL60|Q9VL60_DROME  RE01590p OS=Drosophila melanogaster O
  ------ inclusion threshold ------
       0.04   12.8   0.0       0.05   12.5   0.0    1.2  1  sp|O97067|PTH2_DROME    Probable peptidyl-tRNA hydrolase 2 OS


Domain annotation for each sequence (and alignments):
>> tr|Q9VL60|Q9VL60_DROME  RE01590p OS=Drosophila melanogaster OX=7227 GN=anon-WO0118547.208 PE=1 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.1   0.0  4.8e-106  3.3e-102       2     275 .]     157     441 ..     156     441 .. 0.96

  Alignments for each domain:
  == domain 1  score: 341.1 bits;  conditional E-value: 4.8e-106
                   Rsm22   2 eesiaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelke 87 
                             +es++Ya+ar +++yavl+rvL+ela+r+++f+P+s++d+g+g+gt++w+aselw+ +++e++++d+s+e++eis+ +++d +e+k+
  tr|Q9VL60|Q9VL60_DROME 157 YESLVYAIARGAQEYAVLKRVLTELAQRDEQFRPRSFFDFGSGIGTGMWVASELWReHIFEYYNVDRSREMNEISELILRDGHENKQ 243
                             789*****************************************************9****************************** PP

                   Rsm22  88 aalrrsvirealeleea..dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal..kaagfhivAPCP 169
                             +alr++++r+ l   e+  dLviis++L+ele+ e+re++++nlW+k++ +lvivEeGt++G+++v+eaR++l  +++++h+vAPCP
  tr|Q9VL60|Q9VL60_DROME 244 IALRNVFYRQFLPAIETnyDLVIISHTLFELENkEQREDVLRNLWRKCDGYLVIVEEGTRRGSELVNEARQFLleQEQEGHTVAPCP 330
                             ********76665555589**************9***************************************999*********** PP

                   Rsm22 170 HeaaCPlvate...dwChFsqrva..Rlslhrlaksasvpvedekfsy..vakerqprasa.aaRvvrptkvrskkvlidlCsedet 248
                             H+++CP+++++   ++C+F++++a  Rl++++la+        +++sy  ++k++q+++s+ ++R+vrpt vrsk+++++lC+e++t
  tr|Q9VL60|Q9VL60_DROME 331 HDLVCPRLRDLadrTPCNFPISYAplRLGSDFLADR-----HTSLYSYaiLKKGSQSDSSSsWPRIVRPTLVRSKHAICRLCTEKGT 412
                             ********9988889********************7.....5799***99999999887656************************* PP

                   Rsm22 249 lqrlvvtK.rkG.eaykaArkaeWGDrlp 275
                             lq++++tK ++G +ay++A++++WGDrlp
  tr|Q9VL60|Q9VL60_DROME 413 LQEVIFTKsKHGkSAYSCAKVSRWGDRLP 441
                             ********99**99************986 PP

>> sp|O97067|PTH2_DROME  Probable peptidyl-tRNA hydrolase 2 OS=Drosophila melanogaster OX=7227 GN=CG1307 PE=2 SV=2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.2e-06      0.05     144     175 ..      69     100 ..      66     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.2e-06
                 Rsm22 144 paGfrrvleaRealkaagfhivAPCPHeaaCP 175
                            + f++vl++R+ lk  +++i+A C H a+  
  sp|O97067|PTH2_DROME  69 NDNFKMVLVVRNDLKMGKGKIAAQCGHGAVGA 100
                           6779***********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (275 nodes)
Target sequences:                        13786  (7394964 residues searched)
Passed MSV filter:                       361  (0.026186); expected 275.7 (0.02)
Passed bias filter:                      244  (0.0176991); expected 275.7 (0.02)
Passed Vit filter:                        18  (0.00130567); expected 13.8 (0.001)
Passed Fwd filter:                         2  (0.000145075); expected 0.1 (1e-05)
Initial search space (Z):              13786  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.01s 00:00:00.16 Elapsed: 00:00:00.06
# Mc/sec: 33893.58
//
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