# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Rsm22.hmm.txt
# target sequence database:        proteomes/Macaca_mulatta.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Rsm22  [M=275]
Accession:   PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    3.4e-61  207.2   0.0    4.6e-61  206.7   0.0    1.2  1  tr|F7EP83|F7EP83_MACMU  Methyltransferase like 17 OS=Macaca m


Domain annotation for each sequence (and alignments):
>> tr|F7EP83|F7EP83_MACMU  Methyltransferase like 17 OS=Macaca mulatta OX=9544 GN=METTL17 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7   0.0   2.2e-65   4.6e-61       4     275 .]     155     441 ..     152     441 .. 0.93

  Alignments for each domain:
  == domain 1  score: 206.7 bits;  conditional E-value: 2.2e-65
                   Rsm22   4 siaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaa 89 
                             s++Y++arl + +a++ r+ +e+++r p f+P++l+d+g+g+g ++waa+ +w  +l+e++ +d+s ++l+++++l++   e  e  
  tr|F7EP83|F7EP83_MACMU 155 SLVYMAARLDGGFAAVSRAFHEIRARNPAFQPQTLMDFGSGTGSVTWAANSIWGqSLREYMCVDKSTAMLALAEKLLKGGSESGEPY 241
                             789***************************************************99******************************* PP

                   Rsm22  90 lrrsvirealeleea...dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal.........kaagfh 163
                                ++ r+ l + ++   d+v+ ++ L el   ++r+++v+ lW+k+ + lv+vE+Gt+aG+r+++eaR+ +           +   
  tr|F7EP83|F7EP83_MACMU 242 IPGVFFRQFLPVSPKvqfDVVVSAFSLSELPSrADRTEVVQTLWRKTGHFLVLVENGTKAGHRLLMEARDLVlkgkeksplDPRPSF 328
                             ******99999999899*************999*************************************98888776665556789 PP

                   Rsm22 164 ivAPCPHeaaCPlvate..dwChFsqrvaRlslhrlaksasvpvedekfsy..vakerqprasaaaRvvrptkvrskkvlidlCsed 246
                             + APCPHe+ CP ++t     C Fsq ++        k       +ekfs   +a+++ ++a+ ++R+ +p   r ++v ++lC  d
  tr|F7EP83|F7EP83_MACMU 329 VFAPCPHELPCPQLTTSrpLACSFSQAYHPIPFRWNKKP-----KEEKFSMviLARGSPEEANRWPRITQPVLRRPRHVHCHLCCPD 410
                             *************99997778*******98887776664.....689***96556666666777*********************** PP

                   Rsm22 247 etlqrlvvtK.rkG.eaykaArkaeWGDrlp 275
                             +++q+ v+t  r+G ++y++Ar+++WGD+lp
  tr|F7EP83|F7EP83_MACMU 411 GHMQHAVITArRHGrDLYRCARVSSWGDLLP 441
                             *********989**999***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (275 nodes)
Target sequences:                        21211  (10888574 residues searched)
Passed MSV filter:                       555  (0.0261657); expected 424.2 (0.02)
Passed bias filter:                      405  (0.0190939); expected 424.2 (0.02)
Passed Vit filter:                        31  (0.00146151); expected 21.2 (0.001)
Passed Fwd filter:                         1  (4.71453e-05); expected 0.2 (1e-05)
Initial search space (Z):              21211  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.01s 00:00:00.22 Elapsed: 00:00:00.07
# Mc/sec: 42776.54
//
[ok]