# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Monodelphis_domestica.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-61 208.8 0.0 1.5e-61 208.4 0.0 1.2 1 tr|F6PFR6|F6PFR6_MONDO Methyltransferase like 17 OS=Monodelp
Domain annotation for each sequence (and alignments):
>> tr|F6PFR6|F6PFR6_MONDO Methyltransferase like 17 OS=Monodelphis domestica OX=13616 GN=METTL17 PE=4 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 208.4 0.0 7e-66 1.5e-61 3 275 .] 175 462 .. 173 462 .. 0.92
Alignments for each domain:
== domain 1 score: 208.4 bits; conditional E-value: 7e-66
Rsm22 3 esiaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkea 88
s++Y++arl + ya++ r+ +e+++rvpdf+P++l+d+g+g+g ++waa w +l+e+l +d s+++l++++ l++ e +
tr|F6PFR6|F6PFR6_MONDO 175 LSLVYMAARLDGGYAAVSRAFHEIQARVPDFKPQTLMDFGSGTGSVTWAAYSSWGqSLREYLCVDSSAAMLALAERLLKGGLESGKP 261
689***************************************************999****************************** PP
Rsm22 89 alrrsvirealeleea...dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal.........kaagf 162
+ ++ r+ l + ++ d+v+ ++ L el ++r+++++ lW+k+ + lv+vE+Gt++G++++++aR+ + + +
tr|F6PFR6|F6PFR6_MONDO 262 HIPGVFFRQFLPVSPKvqfDVVVSAFSLSELPSmADRTEVIQTLWRKTGHFLVLVENGTKSGHHLLMDARDLVlrgqekfplDPRPG 348
*******99999999899***************9*************************************9889877777667889 PP
Rsm22 163 hivAPCPHeaaCPlvate..dwChFsqrvaRlslhrlaksasvpvedekfsyvakerqprasa..aaRvvrptkvrskkvlidlCse 245
h+ APCPHe+ CP + ++C Fsq ++ ++ +ekfs v +r+ ++ +aR+ +p +r ++v ++lC
tr|F6PFR6|F6PFR6_MONDO 349 HVFAPCPHELPCPKLSASrpQPCSFSQAYSTIPFSWN-----HSHKEEKFSLVILSRGRPGEYhqWARLTQPVLKRPRHVHCHLCFP 430
*************9988889*******9986655443.....35689*****5555555444444********************** PP
Rsm22 246 detlqrlvvtK.rkG.eaykaArkaeWGDrlp 275
d++lq++vvt r+G ++y++Ar ++WGDrlp
tr|F6PFR6|F6PFR6_MONDO 431 DGHLQHVVVTPrRHGrDLYRCARASSWGDRLP 462
**********989**999***********986 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 21272 (11266248 residues searched)
Passed MSV filter: 511 (0.0240222); expected 425.4 (0.02)
Passed bias filter: 383 (0.0180049); expected 425.4 (0.02)
Passed Vit filter: 37 (0.00173938); expected 21.3 (0.001)
Passed Fwd filter: 1 (4.70102e-05); expected 0.2 (1e-05)
Initial search space (Z): 21272 [actual number of targets]
Domain search space (domZ): 1 [number of targets reported over threshold]
# CPU time: 0.22u 0.01s 00:00:00.23 Elapsed: 00:00:00.09
# Mc/sec: 34424.65
//
[ok]