# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Monosiga_brevicollis.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-16 58.4 0.0 6.2e-16 57.5 0.0 1.3 1 tr|A9UV40|A9UV40_MONBE Predicted protein OS=Monosiga brevico
0.0092 14.3 0.1 0.013 13.9 0.1 1.1 1 tr|A9VD27|A9VD27_MONBE Predicted protein OS=Monosiga brevico
------ inclusion threshold ------
0.032 12.6 3.4 1.3 7.3 0.1 2.1 2 tr|A9UW84|A9UW84_MONBE Predicted protein OS=Monosiga brevico
Domain annotation for each sequence (and alignments):
>> tr|A9UV40|A9UV40_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=23877 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 57.5 0.0 2e-19 6.2e-16 44 185 .. 132 276 .. 119 287 .. 0.84
Alignments for each domain:
== domain 1 score: 57.5 bits; conditional E-value: 2e-19
Rsm22 44 gpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaalrrsvirealeleeadLviisyvLleled.esreklvknl 128
g al ++w+ + ++ idas++++e+ laa ap+ ++++lr+ ++ ++ + e dL + +y+L e + r + ++ l
tr|A9UV40|A9UV40_MONBE 132 GQREALAYLPQVWPsNQLDYHAIDASQAMHEV---LAAVAPSPEHVHLRQFRYVNLNQQERHDLTVAAYTLSEQPNlRARRTALELL 215
555566667899**88899*********9987...777778888888899999999999999************************* PP
Rsm22 129 WakaskilvivEeGtpaGfrrvleaReal..kaagfhivAPCPHeaaCPlvate..dwChF 185
Wak+++++v++E+G +Gf+++l+aRe l +++ + +vAP P a l ++ +Ch
tr|A9UV40|A9UV40_MONBE 216 WAKTERYMVLIEHGYHNGFQLLLQAREWLmaQEDFGTMVAPDPRRDAKGLPSPHlgFFCHL 276
*****************************766667899***99866554444433355665 PP
>> tr|A9VD27|A9VD27_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=34649 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 13.9 0.1 4.2e-06 0.013 16 122 .. 32 137 .. 26 147 .. 0.76
Alignments for each domain:
== domain 1 score: 13.9 bits; conditional E-value: 4.2e-06
Rsm22 16 yavlrrvLdelaervpdflPkslldvgegpgtalwaaselweeleevlvidaseell.eiskelaadapelkeaalrrsvirealel 101
++l+ + +++++r d++ s+l+vg g g+ el ++++vl d s+++ ++ + a++ ++ e+ ++ i+ + +l
tr|A9VD27|A9VD27_MONBE 32 LNALKEMETQINKRGLDWKQLSVLEVGCGAGVL---SLELAARVKDVLAADPSAAMIaKLKERQAKAGVTNVET--LNEAIERTEQL 113
5788999999****************9988864...4578889********99987615666555555555444..56666677777 PP
Rsm22 102 eea..dLviisyvLleled.esre 122
e+a d+v+is +L+ +++ e+
tr|A9VD27|A9VD27_MONBE 114 EPAsrDIVVISLTLHHVAKvEELL 137
77777**********998866654 PP
>> tr|A9UW84|A9UW84_MONBE Predicted protein OS=Monosiga brevicollis OX=81824 GN=24376 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 6.2 0.6 0.00092 2.8 57 147 .. 79 167 .. 53 188 .. 0.69
2 ? 7.3 0.1 0.00042 1.3 64 147 .. 221 303 .. 193 320 .. 0.76
Alignments for each domain:
== domain 1 score: 6.2 bits; conditional E-value: 0.00092
Rsm22 57 eeleevlvidaseelleiskelaadapelkeaalrrsvirealeleeadLviisyvLleledesreklvknl.WakaskilvivEeG 142
+++++ l + a++ + ++ +l+++ +++ +++ +++ + ++ i +L+ +e++ r++ v ++ +++++il ivE
tr|A9UW84|A9UW84_MONBE 79 PDTKQSLEL-AAKIIDAVNIDLVNNLTAIVDS--SCGTCSQIAQVVNMTVISIEETLNRIEPNWRNDTVYKViVQAVNDILAIVETV 162
455554444.3455566666666666666555..333445677888889999***********9999886651677788******98 PP
Rsm22 143 tpaGf 147
p+
tr|A9UW84|A9UW84_MONBE 163 CPDSA 167
88755 PP
== domain 2 score: 7.3 bits; conditional E-value: 0.00042
Rsm22 64 vidaseelleiskelaadapelkeaalrrsvirealeleeadLviisyvLleledesre.klvknlWakaskilvivEeGtpaGf 147
+ +a ++++ is++l+a+ +++ e + s +++ + ++ +vii +L+++ ++ r+ +l +++++ +++il v + p+
tr|A9UW84|A9UW84_MONBE 221 LAEAVRDMKIISHDLIANLTTIAES--NCSTCSAIVATVDEAIVIIENTLTDIDPDWRNdQLFQAIFQGIQQILGYVTDLCPSSV 303
4577889999999999999999888..45555566777777899999******99777625788999999998877766666555 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 9188 (5511963 residues searched)
Passed MSV filter: 292 (0.0317806); expected 183.8 (0.02)
Passed bias filter: 192 (0.0208968); expected 183.8 (0.02)
Passed Vit filter: 15 (0.00163256); expected 9.2 (0.001)
Passed Fwd filter: 3 (0.000326513); expected 0.1 (1e-05)
Initial search space (Z): 9188 [actual number of targets]
Domain search space (domZ): 3 [number of targets reported over threshold]
# CPU time: 0.11u 0.00s 00:00:00.11 Elapsed: 00:00:00.05
# Mc/sec: 30315.80
//
[ok]