# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Rsm22.hmm.txt # target sequence database: proteomes/Natronomonas_moolapensis.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Rsm22 [M=275] Accession: PF09243.9 Description: Mitochondrial small ribosomal subunit Rsm22 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 0.00017 18.3 0.0 0.00024 17.8 0.0 1.2 1 tr|M1Y1T3|M1Y1T3_NATM8 Probable S-adenosylmethionine-depende Domain annotation for each sequence (and alignments): >> tr|M1Y1T3|M1Y1T3_NATM8 Probable S-adenosylmethionine-dependent methyltransferase OS=Natronomonas moolapensis (strain # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 17.8 0.0 8.8e-08 0.00024 2 118 .. 128 245 .. 127 297 .. 0.72 Alignments for each domain: == domain 1 score: 17.8 bits; conditional E-value: 8.8e-08 Rsm22 2 eesiaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe..eleevlvidaseelleiskelaadapelk 86 e ++aYal+ lp ya+++ vLdel + + +ldvg+g g + + + +l e+ ++ s+++ l p tr|M1Y1T3|M1Y1T3_NATM8 128 ETALAYALYHLPDYYAAIQYVLDELGRAGLLDRTLRVLDVGAGAGGPALGLYDYLPddSLVEYDAVEPSAAADVFETMLDPTRPGFD 214 5689************************999999*********99877776666664778999999999988777666666666666 PP Rsm22 87 eaalrrsvirealeleeadLviisyvLleled 118 + +r+ ++ + e dLv+ vL ele tr|M1Y1T3|M1Y1T3_NATM8 215 AT-VHRETAEAFAPEGEYDLVVFGNVLSELEA 245 55.555555455555566***********986 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (275 nodes) Target sequences: 2723 (809592 residues searched) Passed MSV filter: 57 (0.0209328); expected 54.5 (0.02) Passed bias filter: 53 (0.0194638); expected 54.5 (0.02) Passed Vit filter: 6 (0.00220345); expected 2.7 (0.001) Passed Fwd filter: 1 (0.000367242); expected 0.0 (1e-05) Initial search space (Z): 2723 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 # Mc/sec: 22263.78 // [ok]