# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: pfam_list/Rsm22.hmm.txt # target sequence database: proteomes/Ornithorhynchus_anatinus.fasta # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Rsm22 [M=275] Accession: PF09243.9 Description: Mitochondrial small ribosomal subunit Rsm22 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.1e-61 207.9 0.0 2.8e-61 207.5 0.0 1.2 1 tr|F7F8D3|F7F8D3_ORNAN Uncharacterized protein OS=Ornithorhy ------ inclusion threshold ------ 0.12 11.9 0.0 0.2 11.1 0.0 1.3 1 tr|F7FS45|F7FS45_ORNAN Acetylserotonin O-methyltransferase l Domain annotation for each sequence (and alignments): >> tr|F7F8D3|F7F8D3_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=4 SV=1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 207.5 0.0 2.6e-65 2.8e-61 4 275 .] 157 443 .. 154 443 .. 0.92 Alignments for each domain: == domain 1 score: 207.5 bits; conditional E-value: 2.6e-65 Rsm22 4 siaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaa 89 s++Y++arl +t+a+ r+ +e+++r pdf+P++lld+g+gpg + waa+ +w +l+e+l +d+s+++l++++ l++ e + tr|F7F8D3|F7F8D3_ORNAN 157 SLVYMAARLDGTFAATSRAFHEIQKRLPDFQPRTLLDFGSGPGSVSWAAHSTWGqSLREYLCVDRSAAMLALAERLLKGGSDSGESR 243 789***************************************************99******************************* PP Rsm22 90 lrrsvirealeleea...dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal.........kaagfh 163 +++r+ l + ++ d+v+ ++ L el + r+++v lW+k+ + lv+vE Gt+aG++++++aR+ + + +h tr|F7F8D3|F7F8D3_ORNAN 244 IPAVFLRQFLPVSPKvqfDIVVAAFSLSELPSlAARSEVVSTLWRKTGRFLVLVESGTKAGHQLIMAARDLVlqgqektplDPRPGH 330 ******99999999899*****************************************************9889877766666789* PP Rsm22 164 ivAPCPHeaaCPlvate..dwChFsqrvaRlslhrlaksasvpvedekfsyvakerqprasa..aaRvvrptkvrskkvlidlCsed 246 + APCPH++aCP + +C+Fsq + + + +ekfs v +r p ++Rv++p +r ++v ++lC d tr|F7F8D3|F7F8D3_ORNAN 331 VFAPCPHDLACPHLSASrtLPCNFSQTYYPTPFGW-----DRGHGEEKFSLVILSRDPPPGGqrWSRVIQPVLKRPRHVHCHLCCPD 412 ************98877668*******98655433.....345689*****7777776544334*********************** PP Rsm22 247 etlqrlvvtK.rkG.eaykaArkaeWGDrlp 275 ++l+++v+t r+G ++y++Ar ++WGD+lp tr|F7F8D3|F7F8D3_ORNAN 413 GHLEHVVFTArRHGrDLYRCARASAWGDLLP 443 *********999**999***********985 PP >> tr|F7FS45|F7FS45_ORNAN Acetylserotonin O-methyltransferase like OS=Ornithorhynchus anatinus OX=9258 GN=ASMTL PE=3 SV # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? 11.1 0.0 1.9e-05 0.2 38 143 .. 427 531 .. 416 535 .. 0.74 Alignments for each domain: == domain 1 score: 11.1 bits; conditional E-value: 1.9e-05 Rsm22 38 lldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrsvirealeleeadLviisyvLleledesrekl 124 d+g+ +g+ a ++ +++l +v+v d e + ++s + + ++ + l eadL i+s +L++l +++ ++l tr|F7FS45|F7FS45_ORNAN 427 ACDLGGCTGALACALQQNYPSL-KVTVFDLPEIIENVSAFYPGGHQPPGITFVSGDFFQ--DALPEADLYILSRILQDLSEDQIQAL 510 5667777777777777777665.466677777777777665544444444446667774..45899********************* PP Rsm22 125 vknlWakask..ilvivEeGt 143 + ++ a ++ l++vE G tr|F7FS45|F7FS45_ORNAN 511 LSRISAVCKPggGLLVVERGC 531 ****99888777999999996 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (275 nodes) Target sequences: 21677 (8259262 residues searched) Passed MSV filter: 522 (0.0240808); expected 433.5 (0.02) Passed bias filter: 405 (0.0186834); expected 433.5 (0.02) Passed Vit filter: 34 (0.00156848); expected 21.7 (0.001) Passed Fwd filter: 2 (9.22637e-05); expected 0.2 (1e-05) Initial search space (Z): 21677 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] # CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.06 # Mc/sec: 37854.95 // [ok]