# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: pfam_list/Rsm22.hmm.txt
# target sequence database: proteomes/Ornithorhynchus_anatinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Rsm22 [M=275]
Accession: PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-61 207.9 0.0 2.8e-61 207.5 0.0 1.2 1 tr|F7F8D3|F7F8D3_ORNAN Uncharacterized protein OS=Ornithorhy
------ inclusion threshold ------
0.12 11.9 0.0 0.2 11.1 0.0 1.3 1 tr|F7FS45|F7FS45_ORNAN Acetylserotonin O-methyltransferase l
Domain annotation for each sequence (and alignments):
>> tr|F7F8D3|F7F8D3_ORNAN Uncharacterized protein OS=Ornithorhynchus anatinus OX=9258 PE=4 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 207.5 0.0 2.6e-65 2.8e-61 4 275 .] 157 443 .. 154 443 .. 0.92
Alignments for each domain:
== domain 1 score: 207.5 bits; conditional E-value: 2.6e-65
Rsm22 4 siaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaa 89
s++Y++arl +t+a+ r+ +e+++r pdf+P++lld+g+gpg + waa+ +w +l+e+l +d+s+++l++++ l++ e +
tr|F7F8D3|F7F8D3_ORNAN 157 SLVYMAARLDGTFAATSRAFHEIQKRLPDFQPRTLLDFGSGPGSVSWAAHSTWGqSLREYLCVDRSAAMLALAERLLKGGSDSGESR 243
789***************************************************99******************************* PP
Rsm22 90 lrrsvirealeleea...dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal.........kaagfh 163
+++r+ l + ++ d+v+ ++ L el + r+++v lW+k+ + lv+vE Gt+aG++++++aR+ + + +h
tr|F7F8D3|F7F8D3_ORNAN 244 IPAVFLRQFLPVSPKvqfDIVVAAFSLSELPSlAARSEVVSTLWRKTGRFLVLVESGTKAGHQLIMAARDLVlqgqektplDPRPGH 330
******99999999899*****************************************************9889877766666789* PP
Rsm22 164 ivAPCPHeaaCPlvate..dwChFsqrvaRlslhrlaksasvpvedekfsyvakerqprasa..aaRvvrptkvrskkvlidlCsed 246
+ APCPH++aCP + +C+Fsq + + + +ekfs v +r p ++Rv++p +r ++v ++lC d
tr|F7F8D3|F7F8D3_ORNAN 331 VFAPCPHDLACPHLSASrtLPCNFSQTYYPTPFGW-----DRGHGEEKFSLVILSRDPPPGGqrWSRVIQPVLKRPRHVHCHLCCPD 412
************98877668*******98655433.....345689*****7777776544334*********************** PP
Rsm22 247 etlqrlvvtK.rkG.eaykaArkaeWGDrlp 275
++l+++v+t r+G ++y++Ar ++WGD+lp
tr|F7F8D3|F7F8D3_ORNAN 413 GHLEHVVFTArRHGrDLYRCARASAWGDLLP 443
*********999**999***********985 PP
>> tr|F7FS45|F7FS45_ORNAN Acetylserotonin O-methyltransferase like OS=Ornithorhynchus anatinus OX=9258 GN=ASMTL PE=3 SV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 11.1 0.0 1.9e-05 0.2 38 143 .. 427 531 .. 416 535 .. 0.74
Alignments for each domain:
== domain 1 score: 11.1 bits; conditional E-value: 1.9e-05
Rsm22 38 lldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrsvirealeleeadLviisyvLleledesrekl 124
d+g+ +g+ a ++ +++l +v+v d e + ++s + + ++ + l eadL i+s +L++l +++ ++l
tr|F7FS45|F7FS45_ORNAN 427 ACDLGGCTGALACALQQNYPSL-KVTVFDLPEIIENVSAFYPGGHQPPGITFVSGDFFQ--DALPEADLYILSRILQDLSEDQIQAL 510
5667777777777777777665.466677777777777665544444444446667774..45899********************* PP
Rsm22 125 vknlWakask..ilvivEeGt 143
+ ++ a ++ l++vE G
tr|F7FS45|F7FS45_ORNAN 511 LSRISAVCKPggGLLVVERGC 531
****99888777999999996 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (275 nodes)
Target sequences: 21677 (8259262 residues searched)
Passed MSV filter: 522 (0.0240808); expected 433.5 (0.02)
Passed bias filter: 405 (0.0186834); expected 433.5 (0.02)
Passed Vit filter: 34 (0.00156848); expected 21.7 (0.001)
Passed Fwd filter: 2 (9.22637e-05); expected 0.2 (1e-05)
Initial search space (Z): 21677 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.16u 0.01s 00:00:00.17 Elapsed: 00:00:00.06
# Mc/sec: 37854.95
//
[ok]