# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Rsm22.hmm.txt
# target sequence database:        proteomes/Pan_troglodytes.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Rsm22  [M=275]
Accession:   PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    3.7e-61  207.2   0.0    4.7e-61  206.8   0.0    1.1  1  tr|H2Q7X3|H2Q7X3_PANTR  METTL17 isoform 1 OS=Pan troglodytes 


Domain annotation for each sequence (and alignments):
>> tr|H2Q7X3|H2Q7X3_PANTR  METTL17 isoform 1 OS=Pan troglodytes OX=9598 GN=METTL17 PE=2 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8   0.0     2e-65   4.7e-61       4     275 .]     155     438 ..     152     438 .. 0.93

  Alignments for each domain:
  == domain 1  score: 206.8 bits;  conditional E-value: 2e-65
                   Rsm22   4 siaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaa 89 
                             s++Y++arl + +a++ r+ +e+++r p f+P++l+d+g+g+g ++waa+ +w  +l+e++ +d+s+++l ++++l++   e  e  
  tr|H2Q7X3|H2Q7X3_PANTR 155 SLVYMAARLDGGFAAVSRAFHEIRARNPAFQPQTLMDFGSGTGSVTWAAHSIWGqSLREYMCVDRSAAMLVLAEKLLKGGSESGEPY 241
                             789***************************************************99******************************* PP

                   Rsm22  90 lrrsvirealeleea...dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal.........kaagfh 163
                                ++ r+ l + ++   d+v+ ++ L el   ++r+++v+ lW+k+ + lv+vE+Gt+aG+ ++++aR+ +           + + 
  tr|H2Q7X3|H2Q7X3_PANTR 242 IPGVFFRQFLPVSPKvqfDVVVSAFSLSELPSkADRTEVVQTLWRKTGHFLVLVENGTKAGHSLLMDARDLVlkgkeksplDPRPGF 328
                             ******99999999899*************999*************************************98898776666567789 PP

                   Rsm22 164 ivAPCPHeaaCPlvatedwChFsqrvaRlslhrlaksasvpvedekfsy..vakerqprasaaaRvvrptkvrskkvlidlCsedet 248
                             + APCPHe+ CP +++   C Fsq ++        k       +ekfs   +a+++ ++a+ ++R+ +p  +r ++v ++lC +d++
  tr|H2Q7X3|H2Q7X3_PANTR 329 VFAPCPHELPCPQLTN-LACSFSQAYHPIPFSWNKKP-----KEEKFSMviLARGSPEEANRWPRITQPVLKRPRHVHCHLCCSDGH 409
                             ************9999.89*******98887776664.....689****6556666666777************************* PP

                   Rsm22 249 lqrlvvtK.rkG.eaykaArkaeWGDrlp 275
                             +q+ v+t  r+G ++y++Ar+++WGD+lp
  tr|H2Q7X3|H2Q7X3_PANTR 410 MQHAVITArRHGrDLYRCARVSSWGDLLP 438
                             *******989**999***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (275 nodes)
Target sequences:                        23008  (11942255 residues searched)
Passed MSV filter:                       629  (0.0273383); expected 460.2 (0.02)
Passed bias filter:                      480  (0.0208623); expected 460.2 (0.02)
Passed Vit filter:                        33  (0.00143428); expected 23.0 (0.001)
Passed Fwd filter:                         1  (4.34631e-05); expected 0.2 (1e-05)
Initial search space (Z):              23008  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.01s 00:00:00.24 Elapsed: 00:00:00.08
# Mc/sec: 41051.50
//
[ok]