# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Rsm22.hmm.txt
# target sequence database:        proteomes/Petromyzon_marinus.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Rsm22  [M=275]
Accession:   PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    1.6e-57  194.5   0.0    2.3e-57  194.0   0.0    1.2  1  tr|S4RV55|S4RV55_PETMA  Methyltransferase like 17 OS=Petromyz


Domain annotation for each sequence (and alignments):
>> tr|S4RV55|S4RV55_PETMA  Methyltransferase like 17 OS=Petromyzon marinus OX=7757 PE=4 SV=1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   0.0   1.7e-61   2.3e-57       4     274 ..      85     369 ..      82     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: 194.0 bits;  conditional E-value: 1.7e-61
                   Rsm22   4 siaYalarlpatyavlrrvLdelaervpdflPkslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaa 89 
                             s+ +++ar+ + +a+  r+L+e+++rvpdf P+slld+g+g+g ++waa+e+w+ ++ + + +d s +++++++ l+++ +e+ +  
  tr|S4RV55|S4RV55_PETMA  85 SLTFMAARMGGCHAATVRALTEIKKRVPDFCPTSLLDFGSGTGSSVWAAHETWSgSIGDHYCVDVSPAMNKLADMLLREGQENATSV 171
                             78899*************************************************99******************************9 PP

                   Rsm22  90 lrrsvirealeleea..dLviisyvLleled.esreklvknlWakaskilvivEeGtpaGfrrvleaReal........kaagfhiv 165
                              +r+  r+ l   ++  d+v+ ++ L el    +r   v  lW+++++ lv++E+Gt +G++ +++aR+al        k++++h+ 
  tr|S4RV55|S4RV55_PETMA 172 IERVYFRQFLPPSKVryDVVVAAFSLSELGSaTDRLSTVLSLWQRTNSFLVLIENGTLSGYTILMQARDALlqetdeqnKENQGHVF 258
                             99999966655555499*************999********************************************99999***** PP

                   Rsm22 166 APCPHeaaCPlvate..dwChFsqrvaRlslhrlaksasvpvedekfsy..vakerqprasaaaRvvrptkvrskkvlidlCsedet 248
                             APC H ++CP+++     +C+F+q ++     +  k    p   ekfsy   ++++++++++++R+++p k r++++ +++C +++ 
  tr|S4RV55|S4RV55_PETMA 259 APCSHGLQCPRTLARklIPCNFTQNYQPFD--FESK--LHPSRTEKFSYliFRRGEENAEQVWPRILQPVKCRTRHAHCHMCCSNGA 341
                             **********98877679********8654..4444..357789*****8778889999999************************* PP

                   Rsm22 249 lqrlvvtK.rkG.eaykaArkaeWGDrl 274
                             +++ v+t+ r+G ++y+  r+ + GDr 
  tr|S4RV55|S4RV55_PETMA 342 IEHIVFTRqRHGrDLYRSIRHCKVGDRV 369
                             ************999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (275 nodes)
Target sequences:                        13539  (5048892 residues searched)
Passed MSV filter:                       285  (0.0210503); expected 270.8 (0.02)
Passed bias filter:                      208  (0.015363); expected 270.8 (0.02)
Passed Vit filter:                        18  (0.00132949); expected 13.5 (0.001)
Passed Fwd filter:                         1  (7.38607e-05); expected 0.1 (1e-05)
Initial search space (Z):              13539  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.00s 00:00:00.09 Elapsed: 00:00:00.03
# Mc/sec: 46281.51
//
[ok]