# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b2 (February 2015); http://hmmer.org/
# Copyright (C) 2015 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  pfam_list/Rsm22.hmm.txt
# target sequence database:        proteomes/Pseudomonas_aeruginosa.fasta
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       Rsm22  [M=275]
Accession:   PF09243.9
Description: Mitochondrial small ribosomal subunit Rsm22
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
  ------ inclusion threshold ------
      0.033   11.8   0.0      0.045   11.4   0.0    1.1  1  sp|Q9I5G3|CMOA_PSEAE  Carboxy-S-adenosyl-L-methionine synthas


Domain annotation for each sequence (and alignments):
>> sp|Q9I5G3|CMOA_PSEAE  Carboxy-S-adenosyl-L-methionine synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 226
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.1e-06     0.045      35     131 ..      56     157 ..      41     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-06
                 Rsm22  35 Pksll.dvgegpgtalwaaselwe.eleevlvidaseelle.iskelaadapelkeaalrrsvire...aleleeadLviisyvLlele 117
                           P+s+l d+g   g+++       + +  +v+ +d s+++ e  s++l a+    +e  l  ++i++   al+l+++ Lv + ++L+ ++
  sp|Q9I5G3|CMOA_PSEAE  56 PNSVLyDLGCSLGAVTQSLRRHVRnDGCRVIGVDNSHAMIErCSEYLHAQDAMYQEL-LPVELIEAdilALDLQPTSLVAMNFTLQFVA 143
                           777654899999999998888777788999******998652777777776666665.444444332336899**************** PP

                 Rsm22 118 desreklvknlWak 131
                           +++r  l++++ ++
  sp|Q9I5G3|CMOA_PSEAE 144 PDQRLGLLRRIRQA 157
                           *******9998554 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (275 nodes)
Target sequences:                         5563  (1857172 residues searched)
Passed MSV filter:                       114  (0.0204925); expected 111.3 (0.02)
Passed bias filter:                      103  (0.0185152); expected 111.3 (0.02)
Passed Vit filter:                        13  (0.00233687); expected 5.6 (0.001)
Passed Fwd filter:                         1  (0.000179759); expected 0.1 (1e-05)
Initial search space (Z):               5563  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.02
# Mc/sec: 25536.12
//
[ok]